2019
(2019) Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea.
Nat Microbiol 4(4), 603-613.
10.1038/s41564-019-0363-3
More Details
(2019) Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi.
ISME J .
10.1038/s41396-018-0343-2
More Details
(2019) Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Sci Data 6(1), 140.
10.1038/s41597-019-0141-3
More Details
(2019) Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere.
ISME J 13(6), 1457-1468.
10.1038/s41396-019-0352-9
More Details
(2019) Wetland Sediments Host Diverse Microbial Taxa Capable of Cycling Alcohols.
Appl Environ Microbiol 85(12).
10.1128/AEM.00189-19
More Details
(2019) Viruses control dominant bacteria colonizing the terrestrial deep biosphere after hydraulic fracturing.
Nat Microbiol 4(2), 352-361.
10.1038/s41564-018-0312-6
More Details
(2019) Mediterranean grassland soil C-N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms.
Nat Microbiol .
10.1038/s41564-019-0449-y
More Details
(2019) Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae.
Syst Appl Microbiol 42(1), 41-53.
10.1016/j.syapm.2018.08.007
More Details
(2019) Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops.
Nat Commun 10(1), 4135.
10.1038/s41467-019-11974-4
More Details
(2019) Unexpected host dependency of Antarctic Nanohaloarchaeota.
Proc Natl Acad Sci U S A .
10.1073/pnas.1905179116
More Details
(2019) Interactions between plants and soil shaping the root microbiome under abiotic stress.
Biochem J 476(19), 2705-2724.
10.1042/BCJ20180615
More Details
(2019) Extracellular Electron Transfer May Be an Overlooked Contribution to Pelagic Respiration in Humic-Rich Freshwater Lakes.
mSphere 4(1).
10.1128/mSphere.00436-18
More Details
(2019) Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Sci Data 6(1), 207.
10.1038/s41597-019-0222-3
More Details
(2019) Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.
Nature Biotechnology 37(6), 632-+.
10.1038/s41587-019-0100-8
More Details
(2019) MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies.
Peerj 7.
10.7717/peerj.7359
More Details
(2019) Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils.
FEMS Microbiol Ecol 95(2).
10.1093/femsec/fiy230
More Details
(2019) Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology.
Trends Microbiol .
10.1016/j.tim.2019.03.003
More Details
(2019) Insight into the Bacterial Endophytic Communities of Peach Cultivars Related to Crown Gall Disease Resistance.
Appl Environ Microbiol .
10.1128/AEM.02931-18
More Details
(2019) Advancing Genome-Resolved Metagenomics beyond the Shotgun.
mSystems 4(3).
10.1128/mSystems.00118-19
More Details
(2019) Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor.
Water Res 158, 146-156.
10.1016/j.watres.2019.04.038
More Details
(2019) Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.
Biotechniques .
10.2144/btn-2018-0192
More Details
(2019) Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.
Syst Appl Microbiol 42(1), 54-66.
10.1016/j.syapm.2018.12.003
More Details
(2019) Numerous cultivated and uncultivated viruses encode ribosomal proteins.
Nat Commun 10(1), 752.
10.1038/s41467-019-08672-6
More Details
(2019) Novel insights from uncultivated genomes of the global human gut microbiome.
Nature .
10.1038/s41586-019-1058-x
More Details
(2019) Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Sci Data 6(1), 129.
10.1038/s41597-019-0132-4
More Details
(2019) Diversity, evolution, and classification of virophages uncovered through global metagenomics.
Microbiome 7(1), 157.
10.1186/s40168-019-0768-5
More Details
(2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth's biomes.
Nat Microbiol 4(11), 1895-1906.
10.1038/s41564-019-0510-x
More Details
(2019) A Viral Ecogenomics Framework To Uncover the Secrets of Nature's "Microbe Whisperers".
mSystems 4(3).
10.1128/mSystems.00111-19
More Details
(2019) Optimizing de novo genome assembly from PCR-amplified metagenomes.
PeerJ 7, e6902.
10.7717/peerj.6902
More Details
(2019) Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Sci Data 6(1), 285.
10.1038/s41597-019-0287-z
More Details
(2019) Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis.
Plant Direct 3(3), e00122.
10.1002/pld3.122
More Details
(2019) SpaRC: scalable sequence clustering using Apache Spark.
Bioinformatics 35(5), 760-768.
10.1093/bioinformatics/bty733
More Details
(2019) Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community.
MBio 10(6).
10.1128/mBio.02128-19
More Details
(2019) Deep-sea hydrothermal vent metagenome-assembled genomes provide insight into the phylum Nanoarchaeota.
Environ Microbiol Rep 11(2), 262-270.
10.1111/1758-2229.12740
More Details
(2019) Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils.
PeerJ 7, e7265.
10.7717/peerj.7265
More Details
(2019) Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments.
mSystems 4(1).
10.1128/mSystems.00091-18
More Details
(2019) Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons.
ISME J 13(12), 3067-3079.
10.1038/s41396-019-0493-x
More Details
(2019) Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities.
Appl Environ Microbiol 85(10).
10.1128/AEM.00110-19
More Details
(2019) Division of labor in honey bee gut microbiota for plant polysaccharide digestion.
Proc Natl Acad Sci U S A 116(51), 25909-25916.
10.1073/pnas.1916224116
More Details
2018
(2018) Expanded diversity of microbial groups that shape the dissimilatory sulfur cycle.
ISME J .
10.1038/s41396-018-0078-0
More Details
(2018) Discovery of enzymes for toluene synthesis from anoxic microbial communities.
Nat Chem Biol .
10.1038/s41589-018-0017-4
More Details
(2018) Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales.
Proc Natl Acad Sci U S A 115(28), E6585-E6594.
10.1073/pnas.1800155115
More Details
(2018) Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale.
Environmental Microbiology 20(12), 4596-4611.
10.1111/1462-2920.14467
More Details
(2018) Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis.
Nature 558(7710), 440-444.
10.1038/s41586-018-0207-y
More Details
(2018) Metagenomic Analysis of Subtidal Sediments from Polar and Subpolar Coastal Environments Highlights the Relevance of Anaerobic Hydrocarbon Degradation Processes.
Microb Ecol 75(1), 123-139.
10.1007/s00248-017-1028-5
More Details
(2018) Programmed DNA destruction by miniature CRISPR-Cas14 enzymes.
Science .
10.1126/science.aav4294
More Details
(2018) Peatland Acidobacteria with a dissimilatory sulfur metabolism.
ISME J .
10.1038/s41396-018-0077-1
More Details
(2018) Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H-2-oxidation activity measured in three soils exposed to H-2.
Soil Biology & Biochemistry 125, 239-243.
10.1016/j.soilbio.2018.07.020
More Details
(2018) Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2.
Soil Biology and Biochemistry 125, 239-243.
10.1016/j.soilbio.2018.07.020
More Details
(2018) New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes.
Front Microbiol 9, 1635.
10.3389/fmicb.2018.01635
More Details
(2018) Genomic features of bacterial adaptation to plants.
Nat Genet 50(1), 138-150.
10.1038/s41588-017-0012-9
More Details
(2018) Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive.
International Journal of Parallel Programming 46(4), 762-775.
10.1007/s10766-017-0524-z
More Details
(2018) Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States.
Front Microbiol 9, 1775.
10.3389/fmicb.2018.01775
More Details
(2018) Metagenomic insights into diazotrophic communities across Arctic glacier forefields.
FEMS Microbiol Ecol .
10.1093/femsec/fiy114
More Details
(2018) Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.
Nat Microbiol 3(3), 328-336.
10.1038/s41564-017-0098-y
More Details
(2018) A viral reckoning: viruses emerge as essential manipulators of global ecosystems.
Environ Microbiol Rep .
10.1111/1758-2229.12700
More Details
(2018) Minimum Information about an Uncultivated Virus Genome (MIUViG).
Nature Biotechnology 37, 29.
10.1038/nbt.4306
https://www.nature.com/articles/nbt.4306#supplementary-information
More Details
(2018) Hidden diversity of soil giant viruses.
Nature Communications 9, 9.
10.1038/s41467-018-07335-2
More Details
(2018) Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy.
Nat Microbiol 3(7), 836-843.
10.1038/s41564-018-0171-1
More Details
(2018) Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland.
MBio 9(6).
10.1128/mBio.00815-18
More Details
(2018) Diversity of Active Viral Infections within the Sphagnum Microbiome.
Appl Environ Microbiol 84(23).
10.1128/AEM.01124-18
More Details
(2018) Landscape topography structures the soil microbiome in arctic polygonal tundra.
Nat Commun 9(1), 777.
10.1038/s41467-018-03089-z
More Details
(2018) Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing.
Msystems 3(5), 21.
10.1128/mSystems.00076-18
More Details
(2018) Large-scale replicated field study of maize rhizosphere identifies heritable microbes.
Proc Natl Acad Sci U S A 115(28), 7368-7373.
10.1073/pnas.1800918115
More Details
(2018) A most wanted list of conserved microbial protein families with no known domains.
Plos One 13(10).
10.1371/journal.pone.0205749
More Details
(2018) Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil.
Nat Ecol Evol 2(3), 499-509.
10.1038/s41559-017-0463-5
More Details
(2018) Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil.
Nat Ecol Evol 2(3), 499-509.
10.1038/s41559-017-0463-5
More Details
2017
(2017) Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla.
Front Microbiol 8, 2264.
10.3389/fmicb.2017.02264
More Details
(2017) Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales.
mSphere 2(4).
10.1128/mSphereDirect.00257-17
More Details
(2017) IMG/M: integrated genome and metagenome comparative data analysis system.
Nucleic Acids Res 45(D1), D507-D516.
10.1093/nar/gkw929
More Details
(2017) Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota.
ISME J .
10.1038/s41396-017-0002-z
More Details
(2017) Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.
Stand Genomic Sci 12, 67.
10.1186/s40793-017-0279-6
More Details
(2017) The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils.
Sci Rep 7(1), 6008.
10.1038/s41598-017-06112-3
More Details
(2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
PLoS One 12(5), e0177189.
10.1371/journal.pone.0177189
More Details
(2017) Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
PLoS One 12(5), e0177189.
10.1371/journal.pone.0177189
More Details
(2017) Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI.
mSystems 2(4).
10.1128/mSystems.00091-17
More Details
(2017) A genomic perspective on stoichiometric regulation of soil carbon cycling.
ISME J .
10.1038/ismej.2017.115
More Details
(2017) A compendium of multi-omic sequence information from the Saanich Inlet water column.
Sci Data 4, 170160.
10.1038/sdata.2017.160
More Details
(2017) Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.
Nat Commun 8(1), 1507.
10.1038/s41467-017-01376-9
More Details
(2017) Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes.
mSphere 2(5).
10.1128/mSphere.00277-17
More Details
(2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.
Proc Natl Acad Sci U S A 114(28), 7432-7437.
10.1073/pnas.1703424114
More Details
(2017) Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders.
Proc Natl Acad Sci U S A .
10.1073/pnas.1703424114
More Details
(2017) Integration of Metagenomic and Stable Carbon Isotope Evidence Reveals the Extent and Mechanisms of Carbon Dioxide Fixation in High-Temperature Microbial Communities.
Front Microbiol 8, 88.
10.3389/fmicb.2017.00088
More Details
(2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
PeerJ 5, e3134.
10.7717/peerj.3134
More Details
(2017) Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.
PeerJ 5, e3134.
10.7717/peerj.3134
More Details
(2017) Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep.
BMC Res Notes 10(1), 367.
10.1186/s13104-017-2671-0
More Details
(2017) Genome-Resolved Meta-Omics Ties Microbial Dynamics to Process Performance in Biotechnology for Thiocyanate Degradation.
Environ Sci Technol 51(5), 2944-2953.
10.1021/acs.est.6b04477
More Details
(2017) The tale of a neglected energy source: Elevated hydrogen exposure affects both microbial diversity and function in soil.
Appl Environ Microbiol 83(11).
10.1128/AEM.00275-17
More Details
(2017) Patterns and drivers of fungal community depth stratification in Sphagnum peat.
FEMS Microbiol Ecol 93(7).
10.1093/femsec/fix082
More Details
(2017) Lignocellulose pretreatment in a fungus-cultivating termite.
Proc Natl Acad Sci U S A 114(18), 4709-4714.
10.1073/pnas.1618360114
More Details
(2017) Lignocellulose pretreatment in a fungus-cultivating termite.
Proc Natl Acad Sci U S A 114(18), 4709-4714.
10.1073/pnas.1618360114
More Details
(2017) Metagenomic and metatranscriptomic analyses reveal structure and dynamics of a dechlorinating community containing Dehalococcoides mccartyi and corrinoid-providing microorganisms under cobalamin-limited condition.
Appl Environ Microbiol .
10.1128/AEM.03508-16
More Details
(2017) Conversion of Amazon rainforest to agriculture alters community traits of methane-cycling organisms.
Mol Ecol 26(6), 1547-1556.
10.1111/mec.14011
More Details
(2017) 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.
Nat Biotechnol .
10.1038/nbt.3886
More Details
(2017) The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.
MBio 8(1).
10.1128/mBio.01969-16
More Details
(2017) Protein structure determination using metagenome sequence data.
Science 355(6322), 294-298.
10.1126/science.aah4043
More Details
(2017) Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data.
Nat Protoc 12(8), 1673-1682.
10.1038/nprot.2017.063
More Details
(2017) Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity.
PeerJ 5, e3817.
10.7717/peerj.3817
More Details
(2017) Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics.
Nat Commun 8(1), 858.
10.1038/s41467-017-01086-2
More Details
(2017) Towards a balanced view of the bacterial tree of life.
Microbiome 5(1), 140.
10.1186/s40168-017-0360-9
More Details
(2017) Giant viruses with an expanded complement of translation system components.
Science 356(6333), 82-85.
10.1126/science.aal4657
More Details
(2017) Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Nat Methods 14(11), 1063-1071.
10.1038/nmeth.4458
More Details
(2017) Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism.
Microbiome 5(1), 65.
10.1186/s40168-017-0287-1
More Details
(2017) Diurnal cycling of rhizosphere bacterial communities is associated with shifts in carbon metabolism.
Microbiome 5(1), 65.
10.1186/s40168-017-0287-1
More Details
(2017) NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks.
BMC Res Notes 10(1), 278.
10.1186/s13104-017-2607-8
More Details
(2017) Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
J Biomol Tech .
10.7171/jbt.17-2801-004
More Details
(2017) Succession in the petroleum reservoir microbiome through an oil field production lifecycle.
ISME J .
10.1038/ismej.2017.78
More Details
(2017) Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico.
Sci Rep 7(1), 16015.
10.1038/s41598-017-16375-5
More Details
(2017) Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico.
Sci Rep 7(1), 16015.
10.1038/s41598-017-16375-5
More Details
(2017) Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples.
Elife 6.
10.7554/eLife.26580
More Details
(2017) DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies.
ISME J , 112-123.
10.1038/ismej.2017.143
More Details
2016
(2016) Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate.
Environ Microbiol 18(6), 1704-19.
10.1111/1462-2920.12819
More Details
(2016) Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs.
Frontiers in Microbiology 7, 25.
10.3389/fmicb.2016.00025
More Details
(2016) Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.
ISME J .
10.1038/ismej.2015.241
More Details
(2016) Measurement of bacterial replication rates in microbial communities.
Nat Biotechnol 34(12), 1256-1263.
10.1038/nbt.3704
More Details
(2016) Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species.
New Phytol .
10.1111/nph.13697
More Details
(2016) Microbial metabolisms in a 2.5-km-deep ecosystem created by hydraulic fracturing in shales.
Nat Microbiol 1, 16146.
10.1038/nmicrobiol.2016.146
More Details
(2016) Seasonal Succession Leads to Habitat-Dependent Differentiation in Ribosomal RNA:DNA Ratios among Freshwater Lake Bacteria.
Front Microbiol 7, 606.
10.3389/fmicb.2016.00606
More Details
(2016) Chloroflexi CL500-11 Populations That Predominate Deep-Lake Hypolimnion Bacterioplankton Rely on Nitrogen-Rich Dissolved Organic Matter Metabolism and C1 Compound Oxidation.
Appl Environ Microbiol 82(5), 1423-32.
10.1128/AEM.03014-15
More Details
(2016) Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods.
Soil Biology & Biochemistry 96, 160-168.
10.1016/j.soilbio.2016.02.002
More Details
(2016) Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.
Nat Commun 7, 10476.
10.1038/ncomms10476
More Details
(2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.
Nature Microbiology , 15032.
10.1038/nmicrobiol.2015.32
More Details
(2016) The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity.
Frontiers in Microbiology 7, 150.
10.3389/fmicb.2016.00150
More Details
(2016) Diverse Bacterial Groups Contribute to the Alkane Degradation Potential of Chronically Polluted Subantarctic Coastal Sediments.
Microb Ecol 71(1), 100-12.
10.1007/s00248-015-0698-0
More Details
(2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.
ISME J 10(10), 2365-75.
10.1038/ismej.2016.42
More Details
(2016) Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.
ISME J .
10.1038/ismej.2016.42
More Details
(2016) The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).
Stand Genomic Sci 11, 17.
10.1186/s40793-016-0138-x
More Details
(2016) 'Candidatus Adiutrix intracellularis', an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen.
Environ Microbiol .
10.1111/1462-2920.13234
More Details
(2016) The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park.
Environ Microbiol 18(12), 4755-4769.
10.1111/1462-2920.13366
More Details
(2016) Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation.
Microbiome 4(1), 56.
10.1186/s40168-016-0201-2
More Details
(2016) Microbiome Data Science: Understanding Our Microbial Planet.
Trends Microbiol 24(6), 425-7.
10.1016/j.tim.2016.02.011
More Details
(2016) BIGMAC : breaking inaccurate genomes and merging assembled contigs for long read metagenomic assembly.
BMC Bioinformatics 17(1), 435.
10.1186/s12859-016-1288-y
More Details
(2016) Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.
Frontiers in Microbiology 7, 238.
10.3389/fmicb.2016.00238
More Details
(2016) Transfer RNAs with novel cloverleaf structures.
Nucleic Acids Res .
10.1093/nar/gkw898
More Details
(2016) Facile Recoding of Selenocysteine in Nature.
Angew Chem Int Ed Engl 55(17), 5337-41.
10.1002/anie.201511657
More Details
(2016) Uncovering Earth's virome.
Nature .
10.1038/nature19094
More Details
(2016) H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups.
PeerJ 4, e1782.
10.7717/peerj.1782
More Details
(2016) Experimental Identification of Small Non-Coding RNAs in the Model Marine Bacterium Ruegeria pomeroyi DSS-3.
Front Microbiol 7, 380.
10.3389/fmicb.2016.00380
More Details
(2016) Large differences in potential denitrification and sediment microbial communities across the Laurentian great lakes.
Biogeochemistry 128(3), 353-368.
10.1007/s10533-016-0212-x
More Details
(2016) Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.
Frontiers in Microbiology 7, 211.
10.3389/fmicb.2016.00211
More Details
(2016) Complementary microorganisms in highly corrosive biofilms from an offshore oil production facility.
Appl Environ Microbiol .
10.1128/AEM.03842-15
More Details
(2016) Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.
Nat Commun 7, 12151.
10.1038/ncomms12151
More Details
(2016) In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community.
Sci Rep 6, 31362.
10.1038/srep31362
More Details
2015
(2015) A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.
Microbiome 3, 5.
10.1186/s40168-015-0067-8
More Details
(2015) Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.
ISME J 10(1), 210-24.
10.1038/ismej.2015.83
More Details
(2015) Unusual biology across a group comprising more than 15% of domain Bacteria.
Nature 523(7559), 208-11.
10.1038/nature14486
More Details
(2015) Elviz - exploration of metagenome assemblies with an interactive visualization tool.
BMC Bioinformatics 16, 130.
10.1186/s12859-015-0566-4
More Details
(2015) Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.
Curr Biol 25(6), 690-701.
10.1016/j.cub.2015.01.014
More Details
(2015) The integrated microbial genome resource of analysis.
Methods Mol Biol 1231, 289-95.
10.1007/978-1-4939-1720-4_18
More Details
(2015) The Joint Genome Institute Offers Resources Beyond a Core Facility.
Microbe 10(7), 289-293.
10.1128/microbe.10.289.1
More Details
(2015) IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites.
MBio 6(4).
10.1128/mBio.00932-15
More Details
(2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.
MBio 6(3), e00066-15.
10.1128/mBio.00066-15
More Details
(2015) Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.
MBio 6(3), e00066-15.
10.1128/mBio.00066-15
More Details
(2015) Comparative metagenomics reveals impact of contaminants on groundwater microbiomes.
Front Microbiol 6, 1205.
10.3389/fmicb.2015.01205
More Details
(2015) Lignin-modifying processes in the rhizosphere of arid land grasses.
Environ Microbiol 17(12), 4965-78.
10.1111/1462-2920.13020
More Details
(2015) Lignin-Modifying Processes in the Rhizosphere of Aridland Grasses.
Environ Microbiol .
10.1111/1462-2920.13020
More Details
(2015) Aquifer environment selects for microbial species cohorts in sediment and groundwater.
ISME J .
10.1038/ismej.2015.2
More Details
(2015) Critical biogeochemical functions in the subsurface are associated with bacteria from new phyla and little studied lineages.
Environ Microbiol .
10.1111/1462-2920.12930
More Details
(2015) Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.
Front Microbiol 6, 1044.
10.3389/fmicb.2015.01044
More Details
(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
More Details
(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
More Details
(2015) MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.
PeerJ 3, e1165.
10.7717/peerj.1165
More Details
(2015) Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.
Environ Microbiol .
10.1111/1462-2920.12936
More Details
(2015) Spatial Homogeneity of Bacterial Communities Associated with the Surface Mucus Layer of the Reef-Building Coral Acropora palmata.
PLoS One 10(12), e0143790.
10.1371/journal.pone.0143790
More Details
(2015) Diverse uncultivated ultra-small bacterial cells in groundwater.
Nat Commun 6, 6372.
10.1038/ncomms7372
More Details
(2015) Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System.
Trends Microbiol 23(11), 730-41.
10.1016/j.tim.2015.07.012
More Details
(2015) Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.
Environ Microbiol .
10.1111/1462-2920.13095
More Details
(2015) Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis.
ISME J .
10.1038/ismej.2015.155
More Details
(2015) Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.
ISME J .
10.1038/ismej.2015.170
More Details
(2015) Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.
ISME J .
10.1038/ismej.2015.170
More Details
(2015) Insights into the bacterial community and its temporal succession during the fermentation of wine grapes.
Front Microbiol 6, 809.
10.3389/fmicb.2015.00809
More Details
(2015) Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes.
Mol Ecol .
10.1111/mec.13419
More Details
(2015) Global diversity and biogeography of deep-sea pelagic prokaryotes.
ISME J .
10.1038/ismej.2015.137
More Details
(2015) Accurate, multi-kb reads resolve complex populations and detect rare microorganisms.
Genome Res 25(4), 534-43.
10.1101/gr.183012.114
More Details
(2015) Performance evaluation and tuning of BioPig for genomic analysis.
Proceedings of the 2015 International Workshop on Data-Intensive Scalable Computing Systems , 1-7.
10.1145/2831244.2831252
More Details
(2015) Similar Microbial Communities Found on Two Distant Seafloor Basalts.
Frontiers in Microbiology 6.
10.3389/fmicb.2015.01409
More Details
(2015) Similar Microbial Communities Found on Two Distant Seafloor Basalts.
Frontiers in Microbiology 6.
ARTN 1409
10.3389/fmicb.2015.01409
More Details
(2015) Metagenomic reconstructions of bacterial CRISPR loci constrain population histories.
ISME J .
10.1038/ismej.2015.162
More Details
(2015) Antarctic archaea-virus interactions: metaproteome-led analysis of invasion, evasion and adaptation.
ISME J 9(9), 2094-107.
10.1038/ismej.2015.110
More Details
(2015) A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses.
Microbiome 3, 62.
10.1186/s40168-015-0129-y
More Details
(2015) High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats.
MBio 6(1).
10.1128/mBio.02288-14
More Details
2014
(2014) Convergent bacterial microbiotas in the fungal agricultural systems of insects.
MBio 5(6).
10.1128/mBio.02077-14
More Details
(2014) Phylogenetically driven sequencing of extremely halophilic archaea reveals strategies for static and dynamic osmo-response.
PLoS Genet 10(11), e1004784.
10.1371/journal.pgen.1004784
More Details
(2014) Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance.
Front Microbiol 5(283), 283.
10.3389/fmicb.2014.00283
More Details
(2014) Metagenomic sequencing of two salton sea microbiomes.
Genome Announc 2(1).
10.1128/genomeA.01208-13
More Details
(2014) Metagenomes from two microbial consortia associated with Santa Barbara seep oil.
Mar Genomics .
10.1016/j.margen.2014.06.003
More Details
(2014) Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Stand Genomic Sci 9(3), 1259-74.
10.4056/sigs.5029016
More Details
(2014) Tackling soil diversity with the assembly of large, complex metagenomes.
Proc Natl Acad Sci U S A 111(13), 4904-9.
10.1073/pnas.1402564111
More Details
(2014) The microbial ecology of permafrost.
Nat Rev Microbiol 12(6), 414-25.
10.1038/nrmicro3262
More Details
(2014) Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.
Appl Environ Microbiol 80(1), 294-305.
10.1128/AEM.02860-13
More Details
(2014) Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities.
Front Microbiol 5, 130.
10.3389/fmicb.2014.00130
More Details
(2014) Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples.
J Vis Exp (94).
10.3791/52117
More Details
(2014) Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk.
Proc Natl Acad Sci U S A 111(47), E5096-104.
10.1073/pnas.1413110111
More Details
(2014) FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus.
Nucleic Acids Res .
10.1093/nar/gku702
More Details
(2014) The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.
Nucleic Acids Res .
10.1093/nar/gku950
More Details
(2014) Improved assemblies using a source-agnostic pipeline for MetaGenomic Assembly by Merging (MeGAMerge) of contigs.
Sci Rep 4, 6480.
10.1038/srep06480
More Details
(2014) A microarray for assessing transcription from pelagic marine microbial taxa.
ISME J .
10.1038/ismej.2014.1
More Details
(2014) Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw.
Biotechnol Biofuels 7(1), 495.
10.1186/s13068-014-0180-0
More Details
(2014) Rearrangement of a Large Novel Pseudomonas aeruginosa Gene Island in Strains Isolated from a Patient Developing Ventilator-Associated Pneumonia.
J Clin Microbiol 52(7), 2430-8.
10.1128/JCM.01626-13
More Details
(2014) Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest.
ISME J .
10.1038/ismej.2014.36
More Details
(2014) Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.
Ecol Lett 17(6), 717-26.
10.1111/ele.12276
More Details
(2014) Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.
ISME J .
10.1038/ismej.2014.18
More Details
(2014) An environmental bacterial taxon with a large and distinct metabolic repertoire.
Nature 506(7486), 58-62.
10.1038/nature12959
More Details
(2014) MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm.
Microbiome 2, 26.
10.1186/2049-2618-2-26
More Details
(2014) Recruiting human microbiome shotgun data to site-specific reference genomes.
PLoS One 9(1), e84963.
10.1371/journal.pone.0084963
More Details
2013
(2013) Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean.
ISME J 7(2), 256-68.
10.1038/ismej.2012.108
More Details
(2013) Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.
Appl Environ Microbiol 79(12), 3770-8.
10.1128/AEM.03833-12
More Details
(2013) Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.
PLoS One 8(7), e68465.
10.1371/journal.pone.0068465
More Details
(2013) Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage.
Nat Commun 4, 1854.
10.1038/ncomms2884
More Details
(2013) Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood- and dung-feeding higher termites.
PLoS One 8(4), e61126.
10.1371/journal.pone.0061126
More Details
(2013) Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling.
Microbiome 1(1), 22.
10.1186/2049-2618-1-22.
More Details
(2013) Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.
Front Microbiol 4, 95.
10.3389/fmicb.2013.00095
More Details
(2013) The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.
Front Microbiol 4, 67.
10.3389/fmicb.2013.00067
More Details
(2013) Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.
Front Microbiol 4, 106.
10.3389/fmicb.2013.00106
More Details
(2013) Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.
ISME J 7(3), 622-34.
10.1038/ismej.2012.132
More Details
(2013) The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.
Front Microbiol 4, 323.
10.3389/fmicb.2013.00323
More Details
(2013) Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.
J Comput Biol 20(10), 714-37.
10.1089/cmb.2013.0084
More Details
(2013) Pyrosequencing reveals high-temperature cellulolytic microbial consortia in Great Boiling Spring after in situ lignocellulose enrichment.
PLoS One 8(3), e59927.
10.1371/journal.pone.0059927
More Details
(2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions.
Proc Natl Acad Sci U S A 110(16), 6548-53.
10.1073/pnas.1302837110
More Details
(2013) Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.
ISME J .
10.1038/ismej.2013.129
More Details
(2013) Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.
Appl Environ Microbiol 79(9), 2932-43.
10.1128/AEM.03591-12
More Details
(2013) Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle.
PLoS One 8(9), e73827.
10.1371/journal.pone.0073827
More Details
(2013) Comparative Genomic Analysis of the Endosymbionts of Herbivorous Insects Reveals Eco-Environmental Adaptations: Biotechnology Applications.
PLoS Genet 9(1).
Artn E1003131Doi 10.1371/Journal.Pgen.1003131
More Details
2012
(2012) Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.
ISME J 6(9), 1688-701.
10.1038/ismej.2012.10
More Details
(2012) Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill.
Environ Microbiol 14(9), 2405-16.
10.1111/j.1462-2920.2012.02780.x
More Details
(2012) Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.
Environ Microbiol 14(1), 207-27.
10.1111/j.1462-2920.2011.02593.x
More Details
(2012) Metagenomic analysis of a stable trichloroethene-degrading microbial community.
ISME J 6(9), 1702-14.
10.1038/ismej.2012.15
More Details
(2012) Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay.
ISME J 6(4), 863-74.
10.1038/ismej.2011.142
More Details
(2012) Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia.
MBio 3(1).
10.1128/mBio.00249-11
More Details
(2012) Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide.
Environ Microbiol 14(5), 1145-58.
10.1111/j.1462-2920.2011.02695.x
More Details
(2012) Bacterial diversity in the cecum of the world's largest living rodent (Hydrochoerus hydrochaeris).
Microb Ecol 63(4), 719-25.
10.1007/s00248-011-9963-z
More Details
(2012) Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia.
Biotechnol Bioeng 109(5), 1140-5.
10.1002/bit.24388
More Details
(2012) Differences in crop bacterial community structure between hoatzins from different geographical locations.
Research in Microbiology 163(3), 211-220.
DOI 10.1016/j.resmic.2012.01.001
More Details
(2012) Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows.
ISME J 6(3), 531-41.
10.1038/ismej.2011.131
More Details
(2012) Microbes in thawing permafrost: the unknown variable in the climate change equation.
ISME J 6(4), 709-12.
10.1038/ismej.2011.163
More Details
(2012) Hydrazine synthase, a unique phylomarker with which to study the presence and biodiversity of anammox bacteria.
Appl Environ Microbiol 78(3), 752-8.
10.1128/AEM.07113-11
More Details
(2012) Mesophilic and thermophilic conditions select for unique but highly parallel microbial communities to perform carboxylate platform biomass conversion.
PLoS One 7(6), e39689.
10.1371/journal.pone.0039689
More Details
(2012) A framework for human microbiome research.
Nature 486(7402), 215-21.
10.1038/nature11209
More Details
(2012) Structure, function and diversity of the healthy human microbiome.
Nature 486(7402), 207-14.
10.1038/nature11234
More Details
(2012) Unlocking the potential of metagenomics through replicated experimental design.
Nature Biotechnology 30(6), 513-520.
Doi 10.1038/Nbt.2235
More Details
(2012) Defining the core Arabidopsis thaliana root microbiome.
Nature 488(7409), 86-90.
10.1038/nature11237
More Details
(2012) Individual genome assembly from complex community short-read metagenomic datasets.
ISME J 6(4), 898-901.
10.1038/ismej.2011.147
More Details
(2012) Individual genome assembly from complex community short-read metagenomic datasets.
ISME J 6(4), 898-901.
10.1038/ismej.2011.147
More Details
(2012) IMG/M: the integrated metagenome data management and comparative analysis system.
Nucleic Acids Res 40(Database issue), D123-9.
10.1093/nar/gkr975
More Details
(2012) IMG/M-HMP: a metagenome comparative analysis system for the Human Microbiome Project.
PLoS One 7(7), e40151.
10.1371/journal.pone.0040151
More Details
(2012) Effect of oxygen minimum zone formation on communities of marine protists.
ISME J 6(8), 1586-601.
10.1038/ismej.2012.7
More Details
(2012) Scaling metagenome sequence assembly with probabilistic de Bruijn graphs.
Proc Natl Acad Sci U S A 109(33), 13272-7.
10.1073/pnas.1121464109
More Details
(2012) Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.
Curr Opin Biotechnol 23(1), 9-15.
10.1016/j.copbio.2011.11.013
More Details
(2012) Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis.
Molecular Plant-Microbe Interactions 25(1), 28-36.
Doi 10.1094/Mpmi-08-11-0204
More Details
(2012) Functional Characteristics of an Endophyte Community Colonizing Rice Roots as Revealed by Metagenomic Analysis.
Molecular Plant-Microbe Interactions 25(1), 28-36.
Doi 10.1094/Mpmi-08-11-0204
More Details
(2012) Targeted and shotgun metagenomic approaches provide different descriptions of dryland soil microbial communities in a manipulated field study.
Environ Microbiol Rep 4(2), 248-56.
10.1111/j.1758-2229.2012.00328.x
More Details
(2012) Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem.
Plos One 7(6).
ARTN e38108
DOI 10.1371/journal.pone.0038108
More Details
(2012) The metagenome of an anaerobic microbial community decomposing poplar wood chips.
PLoS One 7(5), e36740.
10.1371/journal.pone.0036740
More Details
(2012) Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis.
Isme Journal 6(7), 1427-1439.
DOI 10.1038/ismej.2011.200
More Details
(2012) Global distribution of a wild alga revealed by targeted metagenomics.
Curr Biol 22(17), R675-7.
10.1016/j.cub.2012.07.054
More Details
2011
(2011) Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio.
ISME J 5(8), 1323-31.
10.1038/ismej.2011.14
More Details
(2011) Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
Isme Journal 5(1), 161-164.
DOI 10.1038/ismej.2010.97
More Details
(2011) Genomics for key players in the N cycle from guinea pigs to the next frontier.
Methods Enzymol 496, 289-318.
10.1016/B978-0-12-386489-5.00012-9
More Details
(2011) Characterization of Trapped Lignin-Degrading Microbes in Tropical Forest Soil.
Plos One 6(4).
ARTN e19306
DOI 10.1371/journal.pone.0019306
More Details
(2011) Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard.
Stand Genomic Sci 4(2), 271-85.
10.4056/sigs.621069
More Details
(2011) Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass.
Applied and Environmental Microbiology 77(16), 5804-5812.
Doi 10.1128/Aem.00032-11
More Details
(2011) Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.
Science 331(6016), 463-7.
10.1126/science.1200387
More Details
(2011) Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma.
J Allergy Clin Immunol 127(2), 372-381 e1-3.
10.1016/j.jaci.2010.10.048
More Details
(2011) Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
ISME J 5(1), 122-30.
10.1038/ismej.2010.125
More Details
(2011) Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw.
Nature 480(7377), 368-71.
10.1038/nature10576
More Details
(2011) ClaMS: A Classifier for Metagenomic Sequences.
Stand Genomic Sci 5(2), 248-53.
10.4056/sigs.2075298
More Details
(2011) Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies.
Science 333(6042), 646-8.
10.1126/science.1205760
More Details
(2011) Bioenergy feedstock-specific enrichment of microbial populations during high-solids thermophilic deconstruction.
Biotechnol Bioeng 108(9), 2088-98.
10.1002/bit.23176
More Details
(2011) Phage encoded H-NS: a potential achilles heel in the bacterial defence system.
PLoS One 6(5), e20095.
10.1371/journal.pone.0020095
More Details
(2011) Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean.
Science 333(6047), 1296-1300.
DOI 10.1126/science.1203690
More Details
(2011) Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature Biotechnology 29(5), 415-420.
Doi 10.1038/Nbt.1823
More Details
2010
(2010) Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.
PLoS One 5(1), e8812.
10.1371/journal.pone.0008812
More Details
(2010) Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities.
Bioenergy Research 3(2), 146-158.
DOI 10.1007/s12155-010-9089-z
More Details
(2010) Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.
Stand Genomic Sci 2(3), 357-60.
10.4056/sigs.802738
More Details
(2010) Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil.
FEMS Microbiol Ecol 71(1), 23-33.
10.1111/j.1574-6941.2009.00785.x
More Details
(2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.
Environ Microbiol 12(1), 118-23.
10.1111/j.1462-2920.2009.02051.x
More Details
(2010) Evolutionary relationships of wild hominids recapitulated by gut microbial communities.
PLoS Biol 8(11), e1000546.
10.1371/journal.pbio.1000546
More Details
(2010) Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores.
Proc Natl Acad Sci U S A 107(33), 14793-8.
10.1073/pnas.1005297107
More Details
2008
(2008) Identification of ancient remains through genomic sequencing.
Genome Research 18(8), 1347-1353.
DOI 10.1101/gr.076091.108
More Details
(2008) Annotation of metagenome short reads using proxygenes.
Bioinformatics 24(16), I7-I13.
DOI 10.1093/bioinformatics/btn276
More Details
(2008) Toward a standards-compliant genomic and metagenomic publication record.
OMICS 12(2), 157-60.
10.1089/omi.2008.A2B2
More Details
(2008) Microbiology - Metagenomics.
Nature 455(7212), 481-483.
Doi 10.1038/455481a
More Details
(2008) A bacterial metapopulation adapts locally to phage predation despite global dispersal.
Genome Research 18(2), 293-297.
Doi 10.1101/Gr.6835308
More Details
(2008) Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.
Mol Syst Biol 4, 198.
10.1038/msb.2008.35
More Details
(2008) IMG/M: a data management and analysis system for metagenomes.
Nucleic Acids Research 36, D534-D538.
Doi 10.1093/Nar/Gkm869
More Details
(2008) Assembly of viral metagenomes from yellowstone hot springs.
Appl Environ Microbiol 74(13), 4164-74.
10.1128/AEM.02598-07
More Details
(2008) A renaissance for the pioneering 16S rRNA gene.
Curr Opin Microbiol 11(5), 442-6.
10.1016/j.mib.2008.09.011
More Details
(2008) The airborne metagenome in an indoor urban environment.
PLoS One 3(4), e1862.
10.1371/journal.pone.0001862
More Details
(2008) A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells.
Isme Journal 2(11), 1146-1156.
DOI 10.1038/ismej.2008.48
More Details
2006
(2006) An experimental metagenome data management and analysis system.
Bioinformatics 22(14), e359-67.
10.1093/bioinformatics/btl217
More Details