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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … … Any external publication using JGI data that is not associated with a specific JGI proposal , and/or by authors …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… utilize a broad range of the capabilities across at least two of the facilities, and generate datasets beyond what … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The guest we have this week is Professor Cassandra Quave from Emory University, with joint appointments in the School … resources, but they don’t necessarily have the support network, the equipment, the facilities to really apply the … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …

… genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some …