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Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong … . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction methods for … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … navigate to the proposal info page using any of the below methods: Search the Genome Portal Navigate to the JGI Genome …

… at environmental cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated … T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … to more easily integrate the expertise and capabilities of multiple Department of Energy Office of Science National … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing … solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… opportunities for breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … Science (BERSS), or Bioenergy Research Centers (BRCs). Overview … Embargo : A period in which data is not publicly … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… large-scale data and professional expertise to support the global research community in studies of complex biological … data users worldwide download millions of files.  The vast majority of JGI proposals are supported under the auspices … JGI History … Biological and Environmental Research Program Overview … Bioenergy … Environmental Microbiome Processes …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … These insights are crucial for addressing key environmental challenges, such as improving soil health, carbon … metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation potential, antibiotic resistance …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … not so much because we actually don’t know what the vast majority of those do. There’s another data portal out there … of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The Challis/Corre …