JGI publications for calendar year 2022 appear below, listed alphabetically by author.
(2022) Giant virus biology and diversity in the era of genome-resolved metagenomics.
Nature Reviews Microbiology , 1-16.
10.1038/s41579-022-00754-5
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(2022) High-resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa.
G3: Genes, Genomes, Genetics 13(1), jkac269.
10.1093/g3journal/jkac269
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(2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages.
Cell 185(21), 4023-4037.e18.
10.1016/j.cell.2022.08.023
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(2022) Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction.
Microbiome 10(1), 183.
10.1186/s40168-022-01377-x
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(2022) Cave Thiovulum (Candidatus Thiovulum stygium) differs metabolically and genomically from marine species.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-14.
10.1038/s41396-022-01350-4
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(2022) Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta).
New Phytologist 236(4), 1497-1511.
10.1111/nph.18429
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(2022) The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum.
Journal of Fungi 8(12), 1315.
10.3390/jof8121315
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(2022) MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
Nucleic Acids Research 51(D1), d603-d610.
10.1093/nar/gkac1049
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(2022) Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience 25(8), 104840.
10.1016/j.isci.2022.104840
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(2022) Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate.
Microbiology Resource Announcements 11(9), e00586-22.
10.1128/mra.00586-22
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(2022) MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses.
2605, 271-291.
10.1007/978-1-0716-2871-3_14
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(2022) High-Quality Draft Genome Sequence of Fischerella thermalis JSC-11, a Siderophilic Cyanobacterium with Bioremediation Potential.
Microbiology Resource Announcements 11(11), e00761-22.
10.1128/mra.00761-22
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(2022) Population structure of an Antarctic aquatic cyanobacterium.
Microbiome 10(1), 207.
10.1186/s40168-022-01404-x
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(2022) Microbial communities and biogeochemical functioning across peatlands in the Athabasca Oil Sands region of Canada: Implications for reclamation and management.
Land Degradation and Development .
10.1002/ldr.4549
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(2022) Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes.
mBio 13(6), e01823-22.
10.1128/mbio.01823-22
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(2022) Bioenergy sorghum stem growth regulation: intercalary meristem localization, development, and gene regulatory network analysis.
The Plant Journal 112(2), 476-492.
10.1111/tpj.15960
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(2022) Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum.
Applied and Environmental Microbiology 88(22), e01258-22.
10.1128/aem.01258-22
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(2022) High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water.
G3: Genes, Genomes, Genetics 12(12), jkac282.
10.1093/g3journal/jkac282
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(2022) Diploid-dominant life cycles characterize the early evolution of Fungi.
Proceedings of the National Academy of Sciences of the United States of America 119(36), e2116841119.
10.1073/pnas.2116841119
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(2022) Wildfire-dependent changes in soil microbiome diversity and function.
Nature Microbiology 7(9), 1419-1430.
10.1038/s41564-022-01203-y
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(2022) Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation.
Microbiome 10(1), 5.
10.1186/s40168-021-01194-8
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(2022) Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits.
Microbiome 10(1), 241.
10.1186/s40168-022-01424-7
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(2022) Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.
New Phytologist 236(3), 1154-1167.
10.1111/nph.18407
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(2022) Thermal Stress Has Minimal Effects on Bacterial Communities of Thermotolerant Symbiodinium Cultures.
Frontiers in Ecology and Evolution 10, 764086.
10.3389/fevo.2022.764086
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(2022) Engineering of holocellulase in biomass-degrading fungi for sustainable biofuel production.
Journal of Cleaner Production 371, 133488.
10.1016/j.jclepro.2022.133488
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(2022) Do Genetic Drift and Gene Flow Affect the Geographic Distribution of Female Plants in Gynodioecious Lobelia siphilitica?.
Plants 11(6), 825.
10.3390/plants11060825
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(2022) Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-17.
10.1038/s41396-022-01345-1
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(2022) Defensive symbiosis against giant viruses in amoebae.
Proceedings of the National Academy of Sciences of the United States of America 119(36), e2205856119.
10.1073/pnas.2205856119
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(2022) Development of PCR-based markers for the identification and detection of Lophodermella needle cast pathogens on Pinus contorta var. latifolia and P. flexilis.
Journal of Microbiological Methods 200, 106546.
10.1016/j.mimet.2022.106546
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(2022) Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions.
Scientific Reports 12(1), 7832.
10.1038/s41598-022-11907-0
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(2022) Enhanced terrestrial Fe(II) mobilization identified through a novel mechanism of microbially driven cave formation in Fe(III)-rich rocks.
Scientific Reports 12(1), 17062.
10.1038/s41598-022-21365-3
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(2022) The microbiome of a bacterivorous marine choanoflagellate contains a resource-demanding obligate bacterial associate.
Nature Microbiology 7(9), 1466-1479.
10.1038/s41564-022-01174-0
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(2022) Combinatorial library design for improving isobutanol production in Saccharomyces cerevisiae.
Frontiers in Bioengineering and Biotechnology 10, 1080024.
10.3389/fbioe.2022.1080024
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(2022) Coevolution of the Ess1-CTD axis in polar fungi suggests a role for phase separation in cold tolerance.
Science Advances 8(36), eabq3235.
10.1126/sciadv.abq3235
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(2022) High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii.
Plant Cell & Environment .
10.1111/pce.14507
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(2022) Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica.
Nature Communications 13(1), 922.
10.1038/s41467-022-28540-0
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(2022) Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus.
Metabolic Engineering Communications 15, e00203.
10.1016/j.mec.2022.e00203
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(2022) Identifying the gluc-1 and gluc-2 mutations in Neurospora crassa by genome resequencing.
Journal of Genetics 101(2), 50.
10.1007/s12041-022-01394-7
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(2022) Multiomics in the central Arctic Ocean for benchmarking biodiversity change.
PLOS Biology 20(10), e3001835.
10.1371/journal.pbio.3001835
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(2022) EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning.
Current Research in Biotechnology 4, 1-9.
10.1016/j.crbiot.2021.12.002
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(2022) Poisson hurdle model-based method for clustering microbiome features.
Bioinformatics 39(1), btac782.
10.1093/bioinformatics/btac782
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(2022) Exploring the roles of microbes in facilitating plant adaptation to climate change.
Biochemical Journal 479(3), 327-335.
10.1042/bcj20210793
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(2022) Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae.
Life Science Alliance 6(3), e202201833.
10.26508/lsa.202201833
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(2022) Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium..
Genetics .
10.1093/genetics/iyac146
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(2022) Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi.
2605, 79-102.
10.1007/978-1-0716-2871-3_5
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(2022) Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus..
Plant Physiology .
10.1093/plphys/kiac588
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(2022) Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.
Nature Communications 13(1), 7731.
10.1038/s41467-022-35507-8
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(2022) The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory..
The Plant Cell .
10.1093/plcell/koac347
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(2022) Phenotypic and genomic signatures of interspecies cooperation and conflict in naturally occurring isolates of a model plant symbiont.
Proceedings of the Royal Society B 289(1978), 20220477.
10.1098/rspb.2022.0477
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(2022) Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi.
ACS Synthetic Biology 11(12), 4077-4088.
10.1021/acssynbio.2c00385
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(2022) Complete Genome Sequences of Two Phylogenetically Distinct Nitrospina Strains Isolated from the Atlantic and Pacific Oceans.
Microbiology Resource Announcements 11(5), e00100-22.
10.1128/mra.00100-22
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(2022) Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress.
Algal Research 66, 102794.
10.1016/j.algal.2022.102794
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(2022) Genomic Features of the Bundle-Forming Heliobacterium Heliophilum fasciatum.
Microorganisms 10(5), 869.
10.3390/microorganisms10050869
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(2022) Host genotype controls ecological change in the leaf fungal microbiome.
PLOS Biology 20(8), e3001681.
10.1371/journal.pbio.3001681
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(2022) Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose..
Journal of Industrial Microbiology & Biotechnology .
10.1093/jimb/kuac024
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(2022) Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9..
Nucleic Acids Research 51(D1), d957-d963.
10.1093/nar/gkac974
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(2022) Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.
Cell Genomics 2(12), 100213.
10.1016/j.xgen.2022.100213
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(2022) Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
Plant physiology .
10.1093/plphys/kiac128
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(2022) Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean.
Frontiers in Marine Science 9, 867310.
10.3389/fmars.2022.867310
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(2022) Particulate and dissolved metabolite distributions along a latitudinal transect of the western Atlantic Ocean.
Limnology and Oceanography .
10.1002/lno.12275
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(2022) Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland.
Microbial Ecology , 1-17.
10.1007/s00248-022-02071-z
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(2022) The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Genome Research 32(10), gr.276358.121.
10.1101/gr.276358.121
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(2022) New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria.
Virus Evolution 8(2), veac070.
10.1093/ve/veac070
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(2022) Structural characterization of a soil viral auxiliary metabolic gene product – a functional chitosanase.
Nature Communications 13(1), 5485.
10.1038/s41467-022-32993-8
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(2022) HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.
Microbiome 10(1), 199.
10.1186/s40168-022-01391-z
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(2022) Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster..
International Journal of Systematic and Evolutionary Microbiology 72(9).
10.1099/ijsem.0.005513
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(2022) Environmental predictors of electroactive bacterioplankton in small boreal lakes.
Environmental Microbiology .
10.1111/1462-2920.16314
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(2022) A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass.
Molecular Biology and Evolution 39(10), msac203.
10.1093/molbev/msac203
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(2022) Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.
mSystems 7(4), e00516-22.
10.1128/msystems.00516-22
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(2022) Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean.
Proceedings of the National Academy of Sciences of the United States of America 119(37), e2200014119.
10.1073/pnas.2200014119
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(2022) Pharmaceutical Biotransformation is Influenced by Photosynthesis and Microbial Nitrogen Cycling in a Benthic Wetland Biomat.
Environmental Science and Technology 56(20), 14462-14477.
10.1021/acs.est.2c03566
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(2022) EARLY FLOWERING 3 and Photoperiod Sensing in Brachypodium distachyon.
Frontiers in Plant Science 12, 769194.
10.3389/fpls.2021.769194
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(2022) Protist impacts on marine cyanovirocell metabolism.
ISME Communications 2(1), 94.
10.1038/s43705-022-00169-6
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(2022) Deep-branching acetogens in serpentinized subsurface fluids of Oman.
Proceedings of the National Academy of Sciences of the United States of America 119(42), e2206845119.
10.1073/pnas.2206845119
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(2022) Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils.
Communications Earth & Environment 3(1), 304.
10.1038/s43247-022-00642-z
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(2022) Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Nature Communications 13(1), 2001.
10.1038/s41467-022-29114-w
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(2022) Phenotype to genotype in Neurospora crassa: Association of the scumbo phenotype with mutations in the gene encoding ceramide C9-methyltransferase.
Current Research in Microbial Sciences 3, 100117.
10.1016/j.crmicr.2022.100117
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(2022) Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis.
G3 (Bethesda, Md.) .
10.1093/g3journal/jkac061
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(2022) Toward a data infrastructure for the Plant Cell Atlas..
Plant Physiology 191(1), 35-46.
10.1093/plphys/kiac468
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(2022) Combining GWAS and population genomic analyses to characterize coevolution in a legume‐rhizobia symbiosis.
Molecular Ecology .
10.1111/mec.16602
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(2022) IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata..
Nucleic Acids Research 51(D1), d733-d743.
10.1093/nar/gkac1037
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(2022) Representing sex chromosomes in genome assemblies.
Cell Genomics 2(5), 100132.
10.1016/j.xgen.2022.100132
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(2022) GENESPACE tracks regions of interest and gene copy number variation across multiple genomes.
eLife 11, e78526.
10.7554/elife.78526
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(2022) Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe.
Microbiology Resource Announcements 11(10), e00400-22.
10.1128/mra.00400-22
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(2022) Habitat‐adapted microbial communities mediate Sphagnum peatmoss resilience to warming.
New Phytologist .
10.1111/nph.18072
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(2022) Patterns of pan‐genome occupancy and gene coexpression under water‐deficit in Brachypodium distachyon.
Molecular Ecology 31(20), 5285-5306.
10.1111/mec.16661
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(2022) Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.
PLoS Biology 20(1), e3001508.
10.1371/journal.pbio.3001508
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(2022) Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.
Microbiology Spectrum 10(3), e02346-21.
10.1128/spectrum.02346-21
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(2022) The IMG/M data management and analysis system v.7: content updates and new features..
Nucleic Acids Research 51(D1), d723-d732.
10.1093/nar/gkac976
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(2022) Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants.
Journal of Plant Physiology 277, 153791.
10.1016/j.jplph.2022.153791
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(2022) Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist.
Environmental Microbiology .
10.1111/1462-2920.15956
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(2022) The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein.
New Phytologist .
10.1111/nph.18457
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(2022) Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum).
New Phytologist 236(4), 1393-1408.
10.1111/nph.18443
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(2022) Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems.
STAR Protocols 3(3), 101546.
10.1016/j.xpro.2022.101546
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(2022) Cas9-Based Metabolic Engineering of Issatchenkia orientalis for Enhanced Utilization of Cellulosic Hydrolysates.
Journal of Agricultural and Food Chemistry 70(38), 12085-12094.
10.1021/acs.jafc.2c04251
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(2022) Microbiome composition modulates secondary metabolism in a multispecies bacterial community.
Proceedings of the National Academy of Sciences of the United States of America 119(42), e2212930119.
10.1073/pnas.2212930119
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(2022) Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level.
Fungal Genetics and Biology 159, 103670.
10.1016/j.fgb.2022.103670
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(2022) Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis.
STAR Protocols 3(1), 100968.
10.1016/j.xpro.2021.100968
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(2022) Evolutionary Divergence of Marinobacter Strains in Cryopeg Brines as Revealed by Pangenomics.
Frontiers in Microbiology 13, 879116.
10.3389/fmicb.2022.879116
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(2022) Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome.
Microbiome 10(1), 151.
10.1186/s40168-022-01343-7
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(2022) Genome Sequencing Suggests Diverse Secondary Metabolism in Coral-Associated Aquimarina megaterium.
Microbiology Resource Announcements 11(11), e00620-22.
10.1128/mra.00620-22
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(2022) Evidence of Asexual Overwintering of Melampsora paradoxa and Mapping of Stem Rust Host Resistance in Salix.
Plants 11(18), 2385.
10.3390/plants11182385
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(2022) Cellular assays identify barriers impeding iron-sulfur enzyme activity in a non-native prokaryotic host.
eLife 11, e70936.
10.7554/elife.70936
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(2022) Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA.
Microbiology Resource Announcements 11(8), e00528-22.
10.1128/mra.00528-22
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(2022) .
175, 179-258.
10.1016/bs.agron.2022.04.001
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(2022) Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel Halophilic Marivita Metagenome-Assembled Genomes from Unrestored Solar Salterns.
Genes 13(1), 148.
10.3390/genes13010148
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(2022) pHBMT1, a BAHD-family monolignol acyltransferase, mediates lignin acylation in poplar.
Plant Physiology 188(2), 1014-1027.
10.1093/plphys/kiab546
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(2022) Substrate availability and not thermal acclimation controls microbial temperature sensitivity response to long‐term warming.
Global Change Biology .
10.1111/gcb.16544
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(2022) Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice Bacteriophages.
mBio 13(3), e00651-22.
10.1128/mbio.00651-22
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(2022) Intersubunit Coupling Enables Fast CO2‑Fixation by Reductive Carboxylases.
ACS Central Science 8(8), 1091-1101.
10.1021/acscentsci.2c00057
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(2022) DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
mSystems 7(1), e01092-21.
10.1128/msystems.01092-21
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(2022) The survivor strain: isolation and characterization of Phormidium yuhuli AB48, a filamentous phototactic cyanobacterium with biotechnological potential.
Frontiers in Bioengineering and Biotechnology 10, 932695.
10.3389/fbioe.2022.932695
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(2022) Metagenome-Assembled Genomes for “Candidatus Phormidium sp. Strain AB48” and Co-occurring Microorganisms from an Industrial Photobioreactor Environment.
Microbiology Resource Announcements 11(12), e00447-22.
10.1128/mra.00447-22
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(2022) Metagenome-Assembled Genomes from a Microbiome Grown in Dairy Manure Hydrolysate.
Microbiology Resource Announcements 11(8), e00292-22.
10.1128/mra.00292-22
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(2022) Metagenomes and Metagenome-Assembled Genomes from Microbiomes Metabolizing Thin Stillage from an Ethanol Biorefinery.
Microbiology Resource Announcements 11(8), e00290-22.
10.1128/mra.00290-22
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(2022) Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica.
mSystems 7(4), e00348-22.
10.1128/msystems.00348-22
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(2022) Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology 16(7), 1853-1863.
10.1038/s41396-022-01232-9
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(2022) Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Microbiome 10(1), 67.
10.1186/s40168-022-01254-7
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(2022) A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy..
Phytopathology .
10.1094/phyto-04-22-0128-r
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(2022) The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.
Frontiers in Microbiology 13, 735911.
10.3389/fmicb.2022.735911
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(2022) Persistent memory as an effective alternative to random access memory in metagenome assembly.
BMC Bioinformatics 23(1), 513.
10.1186/s12859-022-05052-8
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(2022) Discordant population structure among rhizobium divided genomes and their legume hosts.
Molecular Ecology .
10.1111/mec.16704
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(2022) Microtopography Matters: Belowground CH4 Cycling Regulated by Differing Microbial Processes in Peatland Hummocks and Lawns.
Journal of Geophysical Research Biogeosciences 127(8).
10.1029/2022jg006948
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(2022) ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria..
Microbial Genomics 8(7).
10.1099/mgen.0.000824
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(2022) Soil compartments (bulk soil, litter, root and rhizosphere) as main drivers of soil protistan communities distribution in forests with different nitrogen deposition.
Soil Biology and Biochemistry 168, 108628.
10.1016/j.soilbio.2022.108628
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(2022) Adaptation to Environmental Extremes Structures Functional Traits in Biological Soil Crust and Hypolithic Microbial Communities.
mSystems 7(4), e01419-21.
10.1128/msystems.01419-21
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(2022) Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytologist 233(3), 1317-1330.
10.1111/nph.17873
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(2022) Thousands of small, novel genes predicted in global phage genomes.
Cell Reports 39(12), 110984.
10.1016/j.celrep.2022.110984
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(2022) Identifying candidate structured RNAs in CRISPR operons.
RNA Biology 19(1), 678-685.
10.1080/15476286.2022.2067714
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(2022) Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis.
Communications Biology 5(1), 500.
10.1038/s42003-022-03461-2
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(2022) Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes.
Applied and Environmental Microbiology 88(10), e02449-21.
10.1128/aem.02449-21
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(2022) Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.
Molecular Ecology .
10.1111/mec.16343
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(2022) Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.
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(2022) Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales).
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(2022) Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates.
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