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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … large populations of bacteria and archaea in their natural environments using single cell approaches. This includes …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …
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Publications
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Plant Program
… soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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Natural Prodcast Episode 15: Katherine Duncan
… I think it must’ve been about 2001, maybe, and so it was before smartphones and before laptops and everything. And I … actinomycetes form spores and can reside in really tough environments kind of adds a fascination from a biological … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to …
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Aquifer environment selects for microbial species cohorts in sediment and groundwater
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Single Cell Research Group
… material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … of candidate phyla  to decipher their possible roles in the environment, establish phylogenetic relationships and to …
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … The research efforts of the group have concentrated in demonstrating the …
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