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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is expected to include all those contributing significantly to the work. The JGI has significant experience and …
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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
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Programs & Platform Leads
As an Integrative Genome Science User Facility, the JGI plays a leadership role in enabling the frontiers of research related to DOE’s missions in bioenergy, carbon cycling and …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629T. M Snook, et. al.  2024 . …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of microbial … Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and influence microbial dynamics, evolution, and …
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Publications
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Institutional User Agreements
… proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … (2016) Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.  Nature Commun. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … Because we always need new antibiotics. We need new cancer agents. We need treatments for humans. And it just so … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … I’ll put up some structures and link to some resources you can use to get caught up, if you’re not already familiar … “development”. So discovery is you find all the innovative leads, and then development is taking the lead into a …
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Secondary Metabolites Program
… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … are biosynthesized and their roles in the environment, can unlock new avenues for bio-based products and bioenergy …
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Natural Prodcast Episode 14: Nigel Mouncey
… for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to kick things … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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