Search

… is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic tree without … the public domain, the bulk of which belong to only three phyla. The Woyke group uses single-cell sequencing as a … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… The program provides high-quality, large-scale genomic data to advance microbial research that drives … management. The program aims to generate high-quality genomic datasets, particularly for uncultivated … laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … of Earth’s Microbiomes. And what this is, is a data set of bacterial and archaeal genomes that were created – these are …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated …

… Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial …