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The Metagenome Program uses advanced sequencing technologies to … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …

The IMG group owns and maintains integral components of JGI’s production … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … of genome and metagenome datasets in a comprehensive comparative context. The IMG data warehouse integrates …

Biology is currently experiencing a revolution brought on by rapid developments in genomics … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …

The JGI Project Management Office carries out a number of activities to … help with: preparing a Statement of Work, completing a formal User Agreement, and ultimately launching the user’s …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

Data produced and released by the US Department of Energy … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …