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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred host taxonomy, conjugation …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … allowing connections between all systems to maximize the impact of user research. The crucial elements are  proposal … No. DE-AC02-05CH11231) in collaboration with the user community.” … Read this publication policy in full, …

… the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … from EcoFAB systems can provide novel insights into the impact of microbial symbionts and their hosts on … of user science, the JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Microbiol Resour Announc. 2025 Draft Genome Sequence of  Trichococcus flocculiformis DSM 2094T Isolated from Bulking …

The Community Science Program (CSP) provides the scientific … synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and …

… went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … genome-enabled understanding of microbial behavior with an impact on the physical, chemical, and geochemical processes … to contaminants such as heavy metals or radionuclides in soils, freshwater, coastal sediments (coastal here defined  …

… the coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature Communications. 9 (1), 1-9 Schulz …

… functional genome annotation, improves understanding of the role small molecules play in diverse biological … and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse biological and … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …