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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … "Advanced Search" next to the search bar. Using the "Search Within" dropdown, select "Proposals". Search for your …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … research.  These efforts include exploration of the global diversity of alternative genetic codes (Science 2014), … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …
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Publications
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … number for the signing official. User Institutions with an active JGI User Agreement older than January 2024 will be …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature …
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Diversity of active viral infections within the Sphagnum microbiome
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … data to gain insights into how small molecules function within plants, microbes, and ecosystems. Identifying and …
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