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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …

Biology is currently experiencing a revolution brought on by rapid developments in … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… that– is toxicity of these heavy metals when they do become airborne and what happens when we breathe these in, … the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

The IMG group owns and maintains integral components of JGI’s production … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link … internal analytical standards to accurately measure environmental microbiome activity levels.This functional …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …