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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Publication Policy
… The purpose of this policy is to establish communication norms around JGI contributions, … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …    Authorship Guidelines JGI will provide all users with a list of JGI staff who contributed to their project, …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a … scientific exploration, granting access to diverse datasets that deepen our understanding of how organisms interact with each other and with their environment and help unravel …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … the Program aims to unlock the fundamental principles that govern ecosystem processes. This research provides …
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New Lineages of Life Group
… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … investigate the coding potential to find novel functions that may impact microbiome structure and biogeochemical …
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Industry Engagement Program
… than 2,500 users that predominately come from the public sector: academic and government institutions — with capabilities that had remained largely unknown and … by integrating supercomputers, datasets and AI agents to solve key national challenges. The Genesis Mission …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … educators from a broad range of disciplines up-to-speed with some of the latest developments in microbial genomics, …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to …
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Microbiome Data Science Team
… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A … Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …
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Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy and environmental problems.  The mission of the National Energy Research … order by the reviewers. The ranked proposal list, along with a recommendation from management at JGI and the other …
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