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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… products and the science and scientists of secondary metabolism. Welcome back for our second season of Natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … first couple of steps of aflatoxin biosynthesis are really unusual. They’re oxidative conversions and do some really …
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Community Science Program
… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of … Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Publications
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … and metabolomics data, shedding light on microbial metabolism and activity in natural environments. Integrating …
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Natural Prodcast Episode 23: Aaron Puri
… organisms? What’s its name? And what kind of secondary metabolism has it got? AARON PURI: Yeah. OK. So I think that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum … sensing circuit that involves three linked genes and an unusual acyl-homoserine lactone signal . mBio. 2023 Aug …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … products and the science and scientists of secondary metabolism. Hey there, and welcome back to Natural Prodcast, …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …
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Unusual Metabolism and Hypervariation in the Genome of a Gracilibacterium (BD1-5) from an Oil-Degrading Community
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of … which highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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