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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … help. … All publications using JGI data produced under a specific non-FICUS proposal(s) and authored by that …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in their natural …
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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By … … Genomic Encyclopedia of Fungi focuses on aspects of plant feedstock health, biorefinery mechanisms and fungal …
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Plant Program
… current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing … These species form the basis of plant research in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Publications
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … and synthesis on behalf of the U.S. Department of Energy Bioenergy Research Centers.  The Centers are intended to … plants both for laboratory research and for improving feedstock crops: Center for Advanced Bioenergy and …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on … ENVnet, researchers are able to test hypotheses concerning specific molecular structures involved in DOM cycling. …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the Agreement. The … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … the development of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering … nodes. These families allow easy access to clade-specific orthology/paralogy relationships as well as …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … and microbes) relevant to the DOE science mission areas of bioenergy and environmental microbiome processes.  Among the … metabolism, physiology, and growth to develop new bioenergy feedstocks with traits tailored for bioenergy and bioproduct …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … production pipeline, ANI is used to ascertain the species specificity of single cells and genomes extracted from …
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