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The Metagenome Program uses advanced sequencing technologies to … and activity in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

… sends Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

… capability of microbial communities based on their metagenome sequence, in the context of reference isolate … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into vector of … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some …

Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …