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Viral Genomics Group
… strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … While an ever-increasing number of phage and virus genomes have been assembled and reported …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… And so, understanding those broader environmental and ecological roles for secondary metabolites is what our … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … , which is a machine learning tool that tries to look at patterns of Pfams through a genome and predict where regions …
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Publication Policy
… The purpose of this policy is to establish communication norms around … recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The Environmental …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This represents a … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to … microbe-microbe and virus-microbe interactions, over ecological and evolutionary time scales.The Metagenome …
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Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … community. For us, it’s these methane oxidizing bacterial communities that we like to look through as a lens, and …
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Publications
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … just been looking at like 16S taxonomic profiles of these communities looking at who is in there, but never like what … Marnix and his collaborators have a fantastic set of software tools for exploring secondary metabolite …
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