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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled experimental and computational … to capture both plant and fungal expression patterns in root cross-sections. … Selected Publications …

… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … grand challenges in Biology, with a special focus on microbiome research.  These efforts include exploration of … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et al. …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … and distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly …

… of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … EcoFABs:  For studying microbe-host (or plant-microbiome) interactions under controlled conditions, … can be designed and studied in  EcoFABs as a synthetic microbiome.  Here, a controlled environment of plant, …

… Uncovering associations between plant roots and fungi that can help or harm plant host health. The … Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated … Arabidopsis thaliana on MycoCosm data portal …

… as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … the JGI went on to advance basic science by sequencing scores of microbial species as well as several model … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated …

… of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements … activity, transcription regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential … drive innovations in energy, environmental sustainability, microbiome manipulation, and other fields, offering new …

… rich and underappreciated. And we’ve worked both with the microbiome. So, with symbiotic bacteria that live in animals … people looking at that chemistry have focused on how their microbiome – how bacteria living with the sponges – … don’t know who makes them. Is it the animal or part of the microbiome that’s making these compounds? So in the end, we …