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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … large-scale genomic data to advance microbial research that drives sustainable solutions in energy, agriculture and …
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Publication Policy
… recognized and credited for their work, while also adhering to the authorship policies of the journal in which the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … up-to-speed with some of the latest developments in microbial genomics, metagenomics, and computational biology, …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics …
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … Exploring the fascinating world of giant viruses, which challenge …
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Publications
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The environment drives microbial trait variability in aquatic habitats
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of … taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated …
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Plant Microbial Interactions Group
… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all … how plants self-organize, influence, and are influenced by microbial partners. We use a variety of genomics-powered …
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Viral Genomics Group
… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … While an ever-increasing number of phage and virus genomes have been …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … they don’t tend to be exposed to many dramatic changes, environmentally speaking. It’s hard to imagine that there … metabolism as a truly wonderful and unique complex trait that has to be evolving under an array of different …
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