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Natural Prodcast Episode 24: Jackie Winter and SMC
Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an … about microbiology and natural products from the Great Salt Lake, and you’re going to learn, like me, what a “haboob” …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National Lab is home to two …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, … And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the …
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes … distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by … microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates with isolate …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … in a Frontiers review paper. We tried to send this whole mega thing to Chemical Reviews , and they’re like, what? No, … project ongoing where they are pre-fractionating this mega library of plant natural products. So these are …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … data set will help identify how different elements of the ecosystem interact and respond to changes in the … Microbiome Data Collective … First-of-its-kind integrated dataset enables genes-to-ecosystems research … Datasets … …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to … and distribution of their own genome and microbiome datasets, as long as they agree with the IMG/M data release …
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Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … from lignin left over after biomass processing. Great Lakes Bioenergy Research Center , led by the University of …
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