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… principles that govern ecosystem processes. This research provides insights into microbial diversity and metabolic … flow. One of the key goals of the Program is to develop a deeper understanding of microbial community assembly and … in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… cycling and inter-organismal interactions. These insights are crucial for addressing key environmental … sequestration and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … the first analysis of data produced at the facility, provided this is done in a timely fashion. The publications …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, … 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

… specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … and follow the metadata requirements for integrating data into IMG/M (see IMG/M submission site ). The Integrated … data warehouse integrates genome and metagenome datasets provided by IMG users with a comprehensive set of publicly …

… molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, … and bioenergy crop enhancement. The program aims to tap into the largely unexplored biochemical diversity within … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… as, “who is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA … activity (BONCAT+FACS). To provide additional functional insights into microbial genomes, the JGI now uses laser …

… environment, establish phylogenetic relationships and to provide valuable reference genomes in under-populated areas … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… interesting. He was interested to know how animals in the ocean use chemistry to interact and it went from there.  … peptides”. And, you know, we don’t need to get too deep into the chemistry but let’s talk about that compound … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… evolution. It also utilizes advanced tools, including deep learning algorithms for gene annotation and protein … and gene copy number variation across multiple genomes. It provides the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …