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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … serves as a community resource for comparative analysis and annotation of all publicly available genomes from three …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … Genomes & Microbiomes system ( IMG/M ) supports the annotation, comparative analysis, and distribution of …

Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … are also lifted at publication of the data. In short, those users not involved with the proposal under …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … that easily can identify secondary metabolite pathways in metagenomes, which is still hard to do. We are mining a lot …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

… this identification, metabolomics enables functional genome annotation, improves understanding of the role small molecules play in diverse biological … profiles from diverse biological and environmental samples using advanced liquid chromatography mass spectrometry …

Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new …