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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
In a special issue of the journal Synthetic Biology, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program and what they’ve discovered through their collaborations.
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A Natural Mechanism Can Turbocharge Viral Evolution
A team has discovered that diversity generating retroelements (DGRs) are not only widespread, but also surprisingly active. In viruses, DGRs appear to generate diversity quickly, allowing these viruses to target new microbial prey.
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Refining the Process of Identifying Algae Biotechnology Candidates
Researchers combined expertise at the National Labs to screen, characterize, sequence and then analyze the genomes and multi-omics datasets for algae that can be used for large-scale production of biofuels and bioproducts.
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Our Projects
Genome Insider podcast: THE Bioenergy Tree
The US Department of Energy’s favorite tree is poplar. In this episode, hear from ORNL scientists who have uncovered remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and materials.
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Virus-Microbe Interactions of Mud Island Mangroves
Through the DOE Office of Science Graduate Student Research (SCGSR) program, Ian Rambo worked on part of his dissertation at the JGI. The chapter focuses on how viruses influence carbon cycling in coastal mangroves.
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Behind the Paper: Hot Springs Metagenomics
Nick Reichart was only a few months into his year-long graduate research project at the JGI, enabled through the DOE Office of Science Graduate Student Research (SCGSR) program, when the pandemic interrupted his plans.
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Data & Tools
- IMG
- Genome Portal
- MycoCosm
- PhycoCosm
- Phytozome
- GOLD
A User-Centered Approach to Accessing JGI Data
Reflecting a structural shift in data access, the JGI Data Portal offers a way for users to more easily access public data sets through a common set of metadata.
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A More Intuitive Phytozome Interface
Phytozome v13 now hosts upwards of 250 plant genomes and provides users with the genome browsers, gene pages, search, BLAST and BioMart data warehouse interfaces they have come to rely on, with a more intuitive interface.
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Webinar: MycoCosm Tutorial
How researchers can utilize the JGI data portal MycoCosm for conducting fungal genomics analyses.
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User Programs
Boosting Small Molecule Production in Super “Soup”
Researchers supported through the Emerging Technologies Opportunity Program describe a two-pronged approach that starts with engineered yeast cells but then moves out of the cell structure into a cell-free system.
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A Powerful Technique to Study Microbes, Now Easier
In JGI's Genome Insider podcast: LLNL biologist Jennifer Pett-Ridge collaborated with JGI scientists through the Emerging Technologies Opportunity Program to semi-automate experiments that measure microbial activity in soil.
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Gut Fungi: Unexpected Source of Novel Chemicals
Combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly powerful: they can whip up dozens of complex natural products, including new ones. Work enabled by the collaborative FICUS JGI-EMSL call.
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News & Publications
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Monitoring Inter-Organism Interactions Within Ecosystems
Many of the proposals approved through JGI's annual Community Science Program call focus on harnessing genomics to developing sustainable resources for biofuels and bioproducts.
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
As warm-adapted microbes edge polewards, they’d oust resident tiny algae. It's a trend that threatens to destabilize the delicate marine food web and change the oceans as we know them.
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Natural Prodcast podcast: Nigel Mouncey
JGI Director Nigel Mouncey has a vision to build out an integrative genomics approach to looking at the interactions of organisms and environments. He also sees secondary metabolism analysis and research as a driver for novel technologies that can serve all JGI users.
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User Programs

https://jgi.doe.gov/kelly-wrighton-colorado-state-university/

Views from Our User Community: Kelly Wrighton

https://jgi.doe.gov/tobias-erb-max-planck-institute-for-terrestrial-microbiology/

Tobias Erb, Max Planck Institute for Terrestrial Microbiology

https://jgi.doe.gov/colleen-hansel-woods-hole-oceanographic-institute/

Colleen Hansel, Woods Hole Oceanographic Institute

https://jgi.doe.gov/j-chris-pires-university-of-missouri/

J. Chris Pires, University of Missouri

https://jgi.doe.gov/cat-adams-university-of-california-berkeley/

Cat Adams, University of California, Berkeley

https://jgi.doe.gov/c-titus-brown-university-of-california-davis/

Views from Our User Community: C. Titus Brown

Views from Our User Community: Jill Banfield

Views from Our User Community: Jill Banfield

https://jgi.doe.gov/rod-wing-arizona-genomics-institute/

Views from Our User Community: Rod Wing

Views from Our User Community: Brian Hedlund

Views from Our User Community: Brian Hedlund

Views from Our User Community: Matt Sullivan

Views from Our User Community: Matt Sullivan

Views from Our User Community: Steven Hallam

Views from Our User Community: Steven Hallam

Views from Our User Community: Mary Ann Moran

Views from Our User Community: Mary Ann Moran

Views from Our User Community: Jeff Dangl

Views from Our User Community: Jeff Dangl

Views from Our User Community: Trina McMahon

Views from Our User Community: Trina McMahon

Keep apprised of the status of JGI’s operations during the limited onsite access due to the COVID-19 pandemic.

Calls for User Proposals:

The Community Science Program (CSP)
Facilities Integrating Collaborations for User Science (FICUS)

User Resources:

Upcoming Opportunities at a glance
Submit a Proposal
Contacts for Users (Project Managers)
JGI Data and Publication Policies
User Agreement
JGI Data Science & Informatics

How do we support user science?

DOE Mission Relevance

Projects with relevance to DOE missions have the best chance for selection.

How to propose a project

Types of Projects accepted, information to include in a proposal, and how to submit.

Project Management

Discover the services we provide our users to facilitate world-class science.

Approved User Proposals

Learn what types of projects have been supported by JGI’s annual calls for proposals.

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