DOE Joint Genome Institute

COVID-19
About Us
Contact Us

Our Science
Tracing the Evolution of Shiitake Mushrooms
Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. Additionally, these fungi play a role in the global carbon cycle.
More
Soil Virus Offers Insight into Maintaining Microorganisms
Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health.
More
Streamlining Regulon Identification in Bacteria
Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.
More
Our Projects
Genome Insider: Methane Makers in Yosemite’s Lakes
Meet researchers who sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains to see how climate change affects freshwater ecosystems, and how those ecosystems work.
Listen
Genome Insider: A Shrubbier Version of Rubber
Hear from the consortium working on understanding the guayule plant's genome, which could lead to an improved natural rubber plant.
Listen
Mapping Switchgrass Traits with Common Gardens
The combination of field data and genetic information has allowed researchers to associate climate adaptations with switchgrass biology.
More
Data & Tools
- IMG
- Data Portal
- MycoCosm
- PhycoCosm
- Phytozome
- GOLD
iPHoP: A Matchmaker for Phages and their Hosts
Building on existing virus-host prediction approaches, a new tool combines and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.
More
Silver Age of GOLD Introduces New Features
The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives.
More
A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Researchers combed through more than 5,000 data sets of RNA sequences generated from diverse environmental samples around the world, resulting in a five-fold increase of RNA virus diversity.
More
User Programs
Supercharging SIP in the Fungal Hyphosphere
Applying high-throughput stable isotope probing to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi.
More
Final Round of 2022 CSP Functional Genomics Awardees
Meet the final six researchers whose proposals were selected for the 2022 Community Science Program Functional Genomics call.
More
Tips for a Winning Community Science Program Proposal
In the Genome Insider podcast, tips to successfully avail of the JGI's proposal calls, many through the Community Science Program.
Listen
News & Publications
- News
- Blog
- Podcasts
- Webinars
- Publications
- Newsletter
- Logos and Templates
- Photos
Exploring Possibilities: 2022 JGI-UC Merced Interns
The 2022 UC Merced intern cohort share how their summer internship experiences have influenced their careers in science.
More
Using Team Science to Build Communities Around Data
As the data portals grow and evolve, the research communities further expand around them. But with two projects, communities are forming to generate high quality genomes to benefit researchers.
More
Cow Rumen and the Early Days of Metagenomics
Tracing a cow rumen dataset from the lab to material for a hands-on undergraduate research course at CSU-San Marcos that has since expanded into three other universities.
More

User Programs

https://jgi.doe.gov/genome-insider-s3-episode-4-from-sample-shipments-to-sequences-a-tour-of-the-jgis-sequencing-pipeline/

LISTEN: A Tour of the JGI’s Sequencing Pipeline

https://youtu.be/BMlrf_i_RB0

WATCH: Pro Tips for Successful CSP Applications

IGB building in foreground with title overlay reading "Available JGI resources for FICUS products"

WATCH: Applying for Resources at Multiple DOE User Facilities

Genome Insider ETOP episode with guest Jennifer Pett-Ridge

LISTEN: Collaborating with JGI on Technologies

Submissions for CSP Functional Genomics Call due July 31, 2023

Calls for User Proposals:

The Community Science Program (CSP)
Facilities Integrating Collaborations for User Science (FICUS)

User Resources:

Upcoming Opportunities at a glance
Submit a Proposal
Contacts for Users (Project Managers)
JGI Data and Publication Policies
User Agreement
JGI Data Science & Informatics

How do we support user science?

DOE Mission Relevance

Projects with relevance to DOE missions have the best chance for selection.

How to propose a project

Types of Projects accepted, information to include in a proposal, and how to submit.

Project Management

Discover the services we provide our users to facilitate world-class science.

Approved User Proposals

Learn what types of projects have been supported by JGI’s annual calls for proposals.

Careers
Contact Us
Events
User Meeting
MGM Workshops
Internal

Disclaimer
Credits
Policies
Emergency Info
Accessibility / Section 508 Statement

JGI is a DOE Office of Science User Facility managed by Lawrence Berkeley National Laboratory

© 1997-2023 The Regents of the University of California