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Publication Policy
… research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …
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Microbiome Data Science Team
… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved … approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …
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Natural Prodcast Episode 11: Marnix Medema
… and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … the world who have made additions to antiSMASH, contributed features. That has been great fun to actually work with so … also have that same disease suppressive effect. But well, causal gene so that the mechanisms were still largely …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …
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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … learning, because it feeds on so much data, right, to learn features of interest. And so, because that it’s such a fuzzy …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … large-scale liquid handling automation, and sequence analysis. … and scalability. Read more about DAP-seq in this science feature. …
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Publications
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder …
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