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… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms … ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question in …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …

… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … bioenergy solutions.  The program has been a pioneering effort in functional genomics since 2012, with a focus on … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has …

… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning … of giant viruses, which challenge our understanding of viral complexity and evolution Our research focuses on …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of …

… research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to …

… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major … (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing …