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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … (MAGs), and 40,000+ metagenomes along with curated environmental- and other metadata to enable comprehensive …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … These insights are crucial for addressing key environmental challenges, such as improving soil health, carbon …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … is to develop a deeper understanding of microbial community assembly and microbial interactions, including …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … unless there’s enough of them around to affect their environment. So I think the classical example yeah, is biofilm … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

See below for examples of successful Letters of Intent to our Community Science … genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil carbon storage during … regulatory networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy crops … …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard … in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( IMG/M …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … on multicore and many core architectures with the ultimate objective of facilitating omics-based scientific …