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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … our policy on research data and analysis products produced through all user projects accepted FY22 and later. … Read …
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Mission
… by the Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, … United States is one of the world’s largest consumers of petroleum, most of which is used for transportation and … and food products). … Microbes constitute the largest reservoir of biodiversity and functional versatility on …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Succession in the petroleum reservoir microbiome through an oil field production lifecycle
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Data Policy
… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … to as “data” for the remainder of this policy) produced through all user projects accepted FY22 and later through … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …
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Publications
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science Program Large-Scale Call, as … to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science … from the PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at …
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Natural Prodcast Episode 17: Cassandra Quave
… is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and College of … with directly, or have met at conferences, or just know through professional circles in some way or another. But … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … ecosystems. … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …
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Secondary Metabolites Program
… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … growth, provide critical advantages to the organisms producing them, and are often involved in defense, nutrient … Metabolites Program targets the vast and underexplored reservoir of secondary metabolites produced by bacteria, …
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Natural Prodcast Episode 5: Brad Moore
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … Not a big leap, but then we began looking at microbiomes associated with various invertebrate organisms, … one of our motivations, as well. Alison: I heard about petroleum products being a basis of synthetic chemistry, …
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