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    Maize can produce a cocktail of antibiotics with a handful of enzymes. (Sam Fentress, CC BY-SA 2.0)
    How Maize Makes An Antibiotic Cocktail
    Zealexins are produced in every corn variety and protect maize by fending off fungal and microbial infections using surprisingly few enzymes.

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    The genome of the common fiber vase or Thelephora terrestris was among those used in the study. (Francis Martin)
    From Competition to Cooperation
    By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how saprotrophs have transitioned to the symbiotic lifestyle.

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    Miscanthus grasses. (Roy Kaltschmidt/Berkeley Lab)
    A Grass Model to Help Improve Giant Miscanthus
    The reference genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.

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    Poplar (Populus trichocarpa and P. deltoides) grow in the Advanced Plant Phenotyping Laboratory (APPL) at Oak Ridge National Laboratory in Tennessee. Poplar is an important biofuel feedstock, and Populus trichocarpa is the first tree species to have its genome sequenced — a feat accomplished by JGI. (Image courtesy of Oak Ridge National Laboratory, U.S. Dept. of Energy)
    Podcast: Xiaohan Yang on A Plantiful Future
    Building off plant genomics collaborations between the JGI and Oak Ridge National Laboratory, Xiaohan Yang envisions customizing plants for the benefit of human society.

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    Expansin complex with cell wall in background. (Courtesy of Daniel Cosgrove)
    Synthesizing Microbial Expansins with Unusual Activities
    Expansin proteins from diverse microbes have potential uses in deconstructing lignocellulosic biomass for conversion to renewable biofuels, nanocellulosic fibers, and commodity biochemicals.

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    High oleic pennycress. (Courtesy of Ratan Chopra)
    Pennycress – A Solution for Global Food Security, Renewable Energy and Ecosystem Benefits
    Pennycress (Thlaspi arvense) is under development as a winter annual oilseed bioenergy crop. It could produce up to 3 billion gallons of seed oil annually while reducing soil erosion and fertilizer runoff.

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    Artistic interpretation of CheckV assessing virus genome sequences from environmental samples. (Rendered by Zosia Rostomian​, Berkeley Lab)
    An Automated Tool for Assessing Virus Data Quality
    CheckV can be broadly utilized by the research community to gauge virus data quality and will help researchers to follow best practices and guidelines for providing the minimum amount of information for an uncultivated virus genome.

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    Unicellular algae in the Chlorella genus, magnified 1300x. (Andrei Savitsky)
    A One-Stop Shop for Analyzing Algal Genomes
    The PhycoCosm data portal is an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental data.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Podcast: A Primer on Genome Mining
    In Natural Prodcast: the basics of genome mining, and how JGI researchers conducted it in IMG/ABC on thousands of metagenome-derived genomes for a Nature Biotechnology paper.

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    Scanning electron micrographs of diverse diatoms. (Credits: Diana Sarno, Marina Montresor, Nicole Poulsen, Gerhard Dieckmann)
    Learn About the Approved 2021 Large-Scale CSP Proposals
    A total of 27 proposals have been approved through JGI's annual Community Science Program (CSP) call. For the first time, 63 percent of the accepted proposals come from researchers who have not previously been a principal investigator on an approved JGI proposal.

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    MiddleGaylor Michael Beman UC Merced
    How to Successfully Apply for a CSP Proposal
    Reach out to JGI staff for feedback before submitting a proposal. Be sure to describe in detail what you will do with the data.

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    Click on the image or go here to watch the video "Enriching target populations for genomic analyses using HCR-FISH" from the journal Microbiome describing the research.
    How to Target a Microbial Needle within a Community Haystack
    Enabled by the JGI’s Emerging Technologies Opportunity Program, researchers have developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then efficiently retrieve and characterize their genomes.

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    Artistic interpretation of how microbial genome sequences from the GEM catalog can help fill in gaps of knowledge about the microbes that play key roles in the Earth's microbiomes. (Rendered by Zosia Rostomian​, Berkeley Lab)
    Uncovering Novel Genomes from Earth’s Microbiomes
    A public repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the known diversity of bacteria and archaea by 44%, is now available .

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    Green millet (Setaria viridis) plant collected in the wild. (Courtesy of the Kellogg lab)
    Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
    In Nature Biotechnology, a very high quality reference Setaria viridis genome was sequenced, and for the first time in wild populations, a gene related to seed dispersal was identified.

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    The Brachypodium distachyon-B. stacei-B. hybridum polyploid model complex. (Illustrations credits: Juan Luis Castillo)
    The More the Merrier: Making the Case for Plant Pan-genomes
    Crop breeders have harnessed polyploidy to increase fruit and flower size, and confer stress tolerance traits. Using a Brachypodium model system, researchers have sought to learn the origins, evolution and development of plant polyploids. The work recently appeared in Nature Communications.

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News & Publications
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February 22, 2021

Green Algae Reveal One mRNA Encodes Many Proteins

Screencap of green algae video for PNAS paperA team of researchers reports unexpectedly finding multiple genes transcribed on a single molecule of mRNA in two algal species. [Read More]

February 8, 2021

An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria

JGI-developed genetic engineering technique CRAGE lands the cover of ACS Synthetic Biology. (Wayne Keefe/Berkeley Lab)A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. [Read More]

January 29, 2021

Susannah Tringe Named 2020 DOE Lawrence Award Recipient

Susannah Tringe at the 2018 Women @ The Lab Award Ceremony - Lawrence Berkeley National LaboratorySusannah Tringe is one of eight scientists and engineers who received the 2020 Ernest Orlando Lawrence Award, one of DOE’s highest honors. [Read More]

December 21, 2020

JGI on the 2020 Highly Cited Researchers List

2020 Highly Cited Researchers at the JGICongratulations to the dozen JGI scientists recognized by Clarivate Analytics for being on the 2020 Highly Cited Researchers list! [Read More]

December 1, 2020

Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics

Tanja Woyke JGITanja Woyke has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020 in recognition of her contributions made to the field. [Read More]

November 19, 2020

Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities

JGI engagement webinar:harnessing metabolomics capabilitiesThe JGI Engagement Webinar held November 5, 2020 (video available with captions) spotlighted the metabolomic analysis capability available through the Community Science Program (CSP). [Read More]

November 5, 2020

UC Merced Interns Reflect on Their JGI Summer Projects

Screencap Axel Visel intro videoOver the summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with their mentors to practice and develop presentation skills as well as build their network in the field of genomics and scientific research. [Read More]

October 28, 2020

JGI Welcomes New UEC Members

(left to right) Kathleen Greenham of the University of Minnesota, Matthias Hess of the University of California, Davis and Kristen DeAngelis of University of Massachusetts-Amherst,The JGI User Executive Committee, which represents the JGI user community, welcomes three new members: Kathleen Greenham, Matthias Hess, and Kristen DeAngelis. [Read More]

October 21, 2020

The JGI Data Portal: Improving User Experience

JGI Data Portal screencapThe JGI Data Portal is a pilot download experience currently accessible from JGI’s plant portal Phytozome, and an updated alternative to the Genome Portal. [Read More]

October 21, 2020

Help from Citrus’ Bitter, Hardier Cousin

Trifoliate orange fruiting at the Brooklyn Botanic Gardens. (Steven Severinghaus, CC BY-NC-SA 2.0)The trifoliate orange can resist citrus greening; its genome sequence to help researchers identify genes that can help other citrus resist the disease. [Read More]
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