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… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … sequencing of microbial communities to uncover the complex interactions and functions that shape ecosystems. By … effort aimed to develop standards, processes, and infrastructure for an integrated microbiome data ecosystem. … …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome Portal …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …

Science  356: 82-85 Ovchinnikov S. et al. (2017) Protein structure determination using metagenome sequence data. Science   … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … so no programming knowledge and no dedicated compute infrastructure is required to perform computational analysis. …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … successful variants made depends on project DNA Synthesis Complex libraries Multiple variants of sgRNA or a small … Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact library types and quality …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … essential tools for exploring the molecular basis of complex biological systems, driving innovations in … us to uncover globally distributed molecules with conserved structures, offering fresh insights into DOM's composition. …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … So he could see really into this– so he could look into the structure, really seeing that. And I’m always just looking … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …