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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication …

… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

To expand access to integrated data, improve tools and … will be the development of tools and infrastructure for microbiome data science, and the development of new informatics tools specifically optimized for high-performance computing …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, … of  Dysgonomonas hofstadii  DSM 104969 Isolated from a human abdominal surgery wound. V. Torres, et. al.  2025. …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …

… annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The …

We need new cancer agents. We need treatments for humans. And it just so happens that bacteria make a lot of … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog …

… which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … and then in terms of there’s sequencing an organism by shotgun, which is what we did, we didn’t even sequence the … where you have to go miles underneath the surface where no human has ever tread And that there’s very, very, very low …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …