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The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional … the deployment of computational workflows at peta- and exa- scales on multicore and many core architectures with the …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral Genomics Group … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … anchors for metagenomes studies.  While uncovering the metabolic potential of uncultivated lineages is of high … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … to accurately measure environmental microbiome activity levels.This functional assay lets us move beyond cataloging …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the …

… epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … crop enhancement. The program aims to tap into the largely unexplored biochemical diversity within secondary … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial metabolism. Of particular interest is understanding the distributed and …