Search

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …

… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from the human gut microbiome. Nature … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and produce valuable metabolites. The program seeks to expand our understanding of algal biology using genomics and …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genome-resolved metagenomics and targeted gene searches to expand representation of uncultivated microbial lineages. …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based …