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Plant Program
… world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create renewable energy …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic … contribute to a dynamic ecosystem. We are interested in how plants self-organize, influence, and are influenced by … genetics (RB-TnSeq), and computational genomics to better understand the plant-associated terrestrial world. Research …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … of this policy and the lists we provide is to help users understand who contributed to the work, and to identify …
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Metabolomics Program
… the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical processes, development of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial for …
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Microbiome Data Science Team
… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … grand challenges in Biology, with a special focus on microbiome research.  These efforts include exploration of … GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark matter …
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Viral Genomics Group
… and affect global nutrient cycling, however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters … Genomics group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics …
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Natural Prodcast Episode 17: Cassandra Quave
… by the small section in the book about the conflicts between ideas of biopiracy versus bioprospecting, and where … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … better could be perhaps to take deeper looks at the interactions that organisms have, not just within the same …
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Metagenome Program
… ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … sustainability, and many other applications. By understanding how microbes contribute to ecosystem … the Program helps drive innovations that could advance our understanding of Earth’s ecosystems. …
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Examples: Successful LOIs & Submissions
… Linking lignin engineering to drought stress resilience: RNA-seq and metabolomic insights in … Elucidating Sphagnum microbiome genetic interactions for improved growth at … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic …
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Natural Prodcast Episode 11: Marnix Medema
… readable. And you can really quickly find relationships between gene clusters of interest. And yeah, that was really … bacteria living on and inside the roots are protecting the plants against pathogens. So usually fungal or oomycete … that the expression of these gene clusters play in these interactions. But also things like trying to predict at …
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Publications
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Interactions between plants and soil shaping the root microbiome under abiotic stress
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