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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … principles that govern ecosystem processes. This research provides insights into microbial diversity and … flow. One of the key goals of the Program is to develop a deeper understanding of microbial community assembly and …
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Publication Policy
… JGI contributions, ensure that all contributors to a research project are appropriately recognized and credited for … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … the first analysis of data produced at the facility, provided this is done in a timely fashion. The publications …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our research focuses on the assembly of metagenomic sequence data … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of … impact microbiome structure and biogeochemical cycles. Research Team    … our understanding of viral complexity and evolution Our research focuses on discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … renewable energy and agricultural productivity. Research spans diverse areas — from understanding how … evolution. It also utilizes advanced tools, including deep learning algorithms for gene annotation and protein …
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Microbiome Data Science Team
… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … The research efforts of the group have concentrated in … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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Publications
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Microbial Program
… cycling and inter-organismal interactions. These insights are crucial for addressing key environmental … sequestration and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable solutions in energy, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first episode up is another … especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com . And then … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Products
… receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI … Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into vector of … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …
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Biodesign
… Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing … that can then be functionally characterized.    We provide custom DNA constructs:  Individually arrayed …
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