2022
(2022) High-resolution mapping reveals hotspots and sex-biased recombination in Populus trichocarpa.
G3: Genes, Genomes, Genetics 13(1), jkac269.
10.1093/g3journal/jkac269
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(2022) Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta).
New Phytologist 236(4), 1497-1511.
10.1111/nph.18429
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(2022) Bioenergy sorghum stem growth regulation: intercalary meristem localization, development, and gene regulatory network analysis.
The Plant Journal 112(2), 476-492.
10.1111/tpj.15960
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(2022) Thermal Stress Has Minimal Effects on Bacterial Communities of Thermotolerant Symbiodinium Cultures.
Frontiers in Ecology and Evolution 10, 764086.
10.3389/fevo.2022.764086
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(2022) Do Genetic Drift and Gene Flow Affect the Geographic Distribution of Female Plants in Gynodioecious Lobelia siphilitica?.
Plants 11(6), 825.
10.3390/plants11060825
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(2022) High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii.
Plant Cell & Environment .
10.1111/pce.14507
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(2022) Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae.
Life Science Alliance 6(3), e202201833.
10.26508/lsa.202201833
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(2022) Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium..
Genetics .
10.1093/genetics/iyac146
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(2022) Agave REVEILLE1 regulates the onset and release of seasonal dormancy in Populus..
Plant Physiology .
10.1093/plphys/kiac588
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(2022) Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.
Nature Communications 13(1), 7731.
10.1038/s41467-022-35507-8
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(2022) The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory..
The Plant Cell .
10.1093/plcell/koac347
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(2022) Host genotype controls ecological change in the leaf fungal microbiome.
PLOS Biology 20(8), e3001681.
10.1371/journal.pbio.3001681
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(2022) Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
Plant physiology .
10.1093/plphys/kiac128
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(2022) The western redcedar genome reveals low genetic diversity in a self-compatible conifer.
Genome Research 32(10), gr.276358.121.
10.1101/gr.276358.121
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(2022) A Pleiotropic Flowering Time QTL Exhibits Gene-by-Environment Interaction for Fitness in a Perennial Grass.
Molecular Biology and Evolution 39(10), msac203.
10.1093/molbev/msac203
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(2022) EARLY FLOWERING 3 and Photoperiod Sensing in Brachypodium distachyon.
Frontiers in Plant Science 12, 769194.
10.3389/fpls.2021.769194
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(2022) Chromosome evolution and the genetic basis of agronomically important traits in greater yam.
Nature Communications 13(1), 2001.
10.1038/s41467-022-29114-w
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(2022) Toward a data infrastructure for the Plant Cell Atlas..
Plant Physiology 191(1), 35-46.
10.1093/plphys/kiac468
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(2022) Representing sex chromosomes in genome assemblies.
Cell Genomics 2(5), 100132.
10.1016/j.xgen.2022.100132
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(2022) GENESPACE tracks regions of interest and gene copy number variation across multiple genomes.
eLife 11, e78526.
10.7554/elife.78526
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(2022) Habitat‐adapted microbial communities mediate Sphagnum peatmoss resilience to warming.
New Phytologist .
10.1111/nph.18072
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(2022) Patterns of pan‐genome occupancy and gene coexpression under water‐deficit in Brachypodium distachyon.
Molecular Ecology 31(20), 5285-5306.
10.1111/mec.16661
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(2022) Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants.
Journal of Plant Physiology 277, 153791.
10.1016/j.jplph.2022.153791
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(2022) The CC–NB–LRR protein BSR1 from Brachypodium confers resistance to Barley stripe mosaic virus in gramineous plants by recognising TGB1 movement protein.
New Phytologist .
10.1111/nph.18457
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(2022) Thousands of small, novel genes predicted in global phage genomes.
Cell Reports 39(12), 110984.
10.1016/j.celrep.2022.110984
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(2022) Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression.
Molecular Ecology .
10.1111/mec.16343
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(2022) Co-occurrence networks reveal more complexity than community composition in resistance and resilience of microbial communities.
Nature Communications 13(1), 3867.
10.1038/s41467-022-31343-y
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(2022) Brachypodium: 20 years as a grass biology model system; the way forward?.
Trends in Plant Science .
10.1016/j.tplants.2022.04.008
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(2022) DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes.
Plants 11(21), 2863.
10.3390/plants11212863
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(2022) N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon..
Journal of Experimental Botany 73(15), 5306-5321.
10.1093/jxb/erac184
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(2022) Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland.
GCB Bioenergy 14(2), 132-156.
10.1111/gcbb.12907
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(2022) Silencing of Dicer‐like protein 2a restores the resistance phenotype in the rice mutant, sxi4 (suppressor of Xa21‐mediated immunity 4).
The Plant Journal .
10.1111/tpj.15692
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(2022) The first complete human genome.
Nature 606(7914), 468-469.
10.1038/d41586-022-01368-w
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(2022) The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune.
mBio 13(3), e00628-22.
10.1128/mbio.00628-22
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(2022) The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle.
The Plant Journal 112(2), 352-368.
10.1111/tpj.15948
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(2022) Critical Assessment of Metagenome Interpretation: the second round of challenges.
Nature Methods 19(4), 429-440.
10.1038/s41592-022-01431-4
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(2022) Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population.
Genetics 221(2), iyac063-.
10.1093/genetics/iyac063
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(2022) The recent evolutionary rescue of a staple crop depended on over half a century of global germplasm exchange.
Science advances 8(6), eabj4633.
10.1126/sciadv.abj4633
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(2022) A generalist–specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range.
Proceedings of the National Academy of Sciences of the United States of America 119(15), e2118879119.
10.1073/pnas.2118879119
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(2022) Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing.
Frontiers in Plant Science 13, 912080.
10.3389/fpls.2022.912080
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(2022) A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants.
Developmental Cell 57(4), 543-560.e9.
10.1016/j.devcel.2022.01.008
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2021
(2021) Dynamic genome evolution in a model fern.
Nature Plants 8(9), 1038-1051.
10.1038/s41477-022-01226-7
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(2021) Genomic variation within the maize stiff-stalk heterotic germplasm pool.
Plant Genome .
10.1002/tpg2.20114
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(2021) Phosphate Availability Modulates Root Exudate Composition and Rhizosphere Microbial Community in a Teosinte and a Modern Maize Cultivar.
Phytobiomes Journal .
10.1094/pbiomes-06-21-0041-r
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(2021) Gene-rich UV sex chromosomes harbor conserved regulators of sexual development.
Science Advances 7(27).
10.1126/sciadv.abh2488
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(2021) Novel metabolic interactions and environmental conditions mediate the boreal peatmoss-cyanobacteria mutualism.
The ISME Journal: Multidisciplinary Journal of Microbial Ecology , 1-12.
10.1038/s41396-021-01136-0
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(2021) Plant single-cell solutions for energy and the environment.
Communications Biology 4(1).
10.1038/s42003-021-02477-4
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(2021) Gamete expression of TALE class HD genes activates the diploid sporophyte program in Marchantia polymorpha.
eLife 10, e57088.
10.7554/elife.57088
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(2021) The contributions from the progenitor genomes of the mesopolyploid brassiceae are evolutionarily distinct but functionally compatible.
Genome Research 31(5), 799-810.
10.1101/GR.270033.120
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(2021) Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae.
Journal of Integrative Plant Biology n/a(n/a).
https://doi.org/10.1111/jipb.13163
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(2021) Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.
Communications Biology 4(1).
10.1038/s42003-021-02009-0
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(2021) Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat.
Frontiers in Plant Science 12.
10.3389/fpls.2021.657796
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(2021) Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, Yucca gloriosa (Asparagaceae).
Frontiers in Plant Science 11, 16.
10.3389/fpls.2020.573767
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(2021) Integrative genomics reveals paths to sex dimorphism in Salix purpurea L.
Horticulture Research 8(1).
10.1038/s41438-021-00606-y
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(2021) Vision, challenges and opportunities for a plant cell atlas.
eLife 10.
10.7554/eLife.66877
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(2021) Plant Pan-Genomics Comes of Age.
Annual Review of Plant Biology 72, 411-435.
10.1146/annurev-arplant-080720-105454
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(2021) Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping.
Plant Genome .
10.1002/tpg2.20110
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(2021) Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.
Nature Communications 12(1).
10.1038/s41467-021-24328-w
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(2021) Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
Nature , 23.
10.1038/s41586-020-03127-1
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(2021) Current status and impending progress for cassava structural genomics.
Plant Molecular Biology , 15.
10.1007/s11103-020-01104-w
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(2021) Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass) [version 1; peer review: 1 approved].
F1000Research 10(289).
10.12688/f1000research.38156.1
More Details
(2021) Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus.
Molecular Biology and Evolution .
10.1093/molbev/msab063
More Details
(2021) KARRIKIN INSENSITIVE2 regulates leaf development, root system architecture and arbuscular‐mycorrhizal symbiosis in Brachypodium distachyon.
The Plant Journal .
10.1111/tpj.15651
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(2021) Cytochrome P450-catalyzed biosynthesis of furanoditerpenoids in the bioenergy crop switchgrass (Panicum virgatum L.).
Plant Journal .
10.1111/tpj.15492
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(2021) Three founding ancestral genomes involved in the origin of sugarcane.
Annals of Botany 127(6), 827-840.
10.1093/aob/mcab008
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(2021) Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.
Proceedings of the National Academy of Sciences of the United States of America 118(29).
10.1073/pnas.2104445118
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(2021) BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon.
BMC Plant Biology 21(1).
10.1186/s12870-021-02970-2
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(2021) Tracking the Ancestry of Known and ‘Ghost’ Homeologous Subgenomes in Model Grass Brachypodium Polyploids.
The Plant Journal .
10.1111/tpj.15650
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(2021) Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions.
Frontiers in Plant Science 12, 747225.
10.3389/fpls.2021.747225
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(2021) Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome.
Phytobiomes Journal 5(2).
10.1094/pbiomes-05-20-0042-rvw
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(2021) Diversification of mandarin citrus by hybrid speciation and apomixis.
Nature Communications 12.
10.1038/s41467-021-24653-0
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(2021) The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in Populus trichocarpa.
Genome Biology and Evolution 13(9).
10.1093/gbe/evab198
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(2021) Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers.
Journal of visualized experiments : JoVE (169).
10.3791/61707
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2020
(2020) Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits.
Bioenergy Research 13(1), 79-99.
10.1007/s12155-020-10090-2
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(2020) The fate of 35S rRNA genes in the allotetraploid grass Brachypodium hybridum.
Plant J .
10.1111/tpj.14869
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(2020) Species-Specific Duplication Event Associated with Elevated Levels of Nonstructural Carbohydrates in Sorghum bicolor.
G3 (Bethesda) 10(5), 1511-1520.
10.1534/g3.119.400921
More Details
(2020) Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus.
Front Microbiol 11, 341.
10.3389/fmicb.2020.00341
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(2020) Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement.
Nat Genet 52(5), 525-533.
10.1038/s41588-020-0614-5
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(2020) Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9.
Nat Commun 11(1), 1178.
10.1038/s41467-020-14981-y
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(2020) Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics.
Nat Commun 11(1), 34.
10.1038/s41467-019-13913-9
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(2020) Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
Nat Commun 11(1), 3670.
10.1038/s41467-020-17302-5
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(2020) A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
Genome Biol 21(1), 259.
10.1186/s13059-020-02162-5
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(2020) Single-parent expression drives dynamic gene expression complementation in maize hybrids.
Plant J .
10.1111/tpj.15042
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(2020) Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation.
New Phytologist .
10.1111/nph.16507
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(2020) Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean.
Genetics 215(1), 267-284.
10.1534/genetics.120.303038
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(2020) A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.
Nat Biotechnol 38(10), 1203-1210.
10.1038/s41587-020-0681-2
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(2020) Genome biology of the paleotetraploid perennial biomass crop Miscanthus.
Nature Communications 11(1).
10.1038/s41467-020-18923-6
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(2020) A chromosome-scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus.
Plant J 104(5), 1215-1232.
10.1111/tpj.14993
More Details
(2020) Phylogenomics reveals convergent evolution of red-violet coloration in land plants and the origins of the anthocyanin biosynthetic pathway.
Mol Phylogenet Evol 151, 106904.
10.1016/j.ympev.2020.106904
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(2020) Impacts of directed evolution and soil management legacy on the maize rhizobiome.
Soil Biology & Biochemistry 145.
ARTN 107794
10.1016/j.soilbio.2020.107794
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(2020) Rationale for reconsidering current regulations restricting use of hybrids in orange juice.
Horticulture Research 7(1).
10.1038/s41438-020-0277-5
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(2020) Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance.
Sci Rep 10(1), 4489.
10.1038/s41598-020-61081-4
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(2020) Mutations in the predicted DNA polymerase subunit POLD3 result in more rapid flowering of Brachypodium distachyon.
New Phytol .
10.1111/nph.16546
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(2020) Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP-TF and determination of its transcriptional effect.
Plant Direct 4(1), e00178.
10.1002/pld3.178
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(2020) Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoe fedtschenkoi, a plant with crassulacean acid metabolism.
Gigascience 9(3).
10.1093/gigascience/giaa018
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(2020) A willow sex chromosome reveals convergent evolution of complex palindromic repeats.
Genome Biol 21(1), 38.
10.1186/s13059-020-1952-4
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2019
(2019) High-density linkage map reveals QTL underlying growth traits in AP13xVS16 biparental population of switchgrass.
Global Change Biology Bioenergy 11(5), 672-690.
10.1111/gcbb.12592
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(2019) The genome sequence of segmental allotetraploid peanut Arachis hypogaea.
Nat Genet 51(5), 877-884.
10.1038/s41588-019-0405-z
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(2019) A New Method to Correct for Habitat Filtering in Microbial Correlation Networks.
Frontiers in Microbiology 10.
10.3389/fmicb.2019.00585
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(2019) Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil.
Sci Rep 9(1), 15611.
10.1038/s41598-019-52148-y
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(2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon.
Curr Protoc Plant Biol , e20088.
10.1002/cppb.20088
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(2019) Agrobacterium-Mediated Transformation of Brachypodium distachyon.
Curr Protoc Plant Biol , e20088.
10.1002/cppb.20088
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(2019) Multitrait genome-wide association analysis of Populus trichocarpa identifies key polymorphisms controlling morphological and physiological traits.
New Phytol 223(1), 293-309.
10.1111/nph.15777
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(2019) PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens.
Plant J 100(5), 1022-1035.
10.1111/tpj.14497
More Details
(2019) A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
BMC Genomics 20(1), 420.
10.1186/s12864-019-5734-x
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(2019) PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Plant J .
10.1111/tpj.14607
More Details
(2019) Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.
Front Plant Sci 10, 1249.
10.3389/fpls.2019.01249
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(2019) Metabotyping as a Stopover in Genome-to-Phenome Mapping.
Sci Rep 9(1), 1858.
10.1038/s41598-019-38483-0
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(2019) Genome sequence of the model rice variety KitaakeX.
BMC Genomics 20(1), 905.
10.1186/s12864-019-6262-4
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(2019) Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9-1.
Rice 12.
10.1186/s12284-019-0308-8
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(2019) The Genetic Architecture of Shoot and Root Trait Divergence Between Mesic and Xeric Ecotypes of a Perennial Grass.
Front Plant Sci 10, 366.
10.3389/fpls.2019.00366
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(2019) Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase.
Nat Plants 5(7), 676-680.
10.1038/s41477-019-0469-x
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(2019) Genome mapping of quantitative trait loci (QTL) controlling domestication traits of intermediate wheatgrass (Thinopyrum intermedium).
Theor Appl Genet .
10.1007/s00122-019-03357-6
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(2019) QTL x environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient.
Proc Natl Acad Sci U S A 116(26), 12933-12941.
10.1073/pnas.1821543116
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(2019) The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes.
BMC Genomics 20(1), 119.
10.1186/s12864-019-5485-8
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(2019) Genome-wide association analysis of stalk biomass and anatomical traits in maize.
BMC Plant Biol 19(1), 45.
10.1186/s12870-019-1653-x
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(2019) Enhancing microRNA167A expression in seed decreases the alpha-linolenic acid content and increases seed size in Camelina sativa.
Plant J .
10.1111/tpj.14223
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(2019) Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication.
BMC Evol Biol 19(1), 77.
10.1186/s12862-019-1398-z
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(2019) Extensions of BLUP Models for Genomic Prediction in Heterogeneous Populations: Application in a Diverse Switchgrass Sample.
G3 (Bethesda) 9(3), 789-805.
10.1534/g3.118.200969
More Details
(2019) Gene regulatory networks for lignin biosynthesis in switchgrass (Panicum virgatum).
Plant Biotechnol J 17(3), 580-593.
10.1111/pbi.13000
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(2019) Salicylic acid activates poplar defense against the biotrophic rust fungus Melampsora larici-populina via increased biosynthesis of catechin and proanthocyanidins.
New Phytol 221(2), 960-975.
10.1111/nph.15396
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(2019) Construction and comparison of three reference-quality genome assemblies for soybean.
Plant J 100(5), 1066-1082.
10.1111/tpj.14500
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(2019) Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Proc Natl Acad Sci U S A .
10.1073/pnas.1907500116
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(2019) Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta.
Genome Biol 20(1), 126.
10.1186/s13059-019-1729-9
More Details
(2019) Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.
Front Genet 10, 487.
10.3389/fgene.2019.00487
More Details
(2019) Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.
Genetics 211(1), 317-331.
10.1534/genetics.118.301589
More Details
(2019) Overexpression of a Prefoldin beta subunit gene reduces biomass recalcitrance in the bioenergy crop Populus.
Plant Biotechnol J .
10.1111/pbi.13254
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2018
(2018) Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.
Environ Microbiol 20(8), 2898-2912.
10.1111/1462-2920.14273
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(2018) Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.).
BMC Evol Biol 18(1), 91.
10.1186/s12862-018-1193-2
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(2018) Genome-wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon.
Plant Journal 96(2), 438-451.
10.1111/tpj.14042
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(2018) A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein.
G3 (Bethesda) .
10.1534/g3.118.200188
More Details
(2018) Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus.
Heredity (Edinb) .
10.1038/s41437-018-0058-1
More Details
(2018) Phytophthora palmivora establishes tissue-specific intracellular infection structures in the earliest divergent land plant lineage.
Proc Natl Acad Sci U S A 115(16), E3846-E3855.
10.1073/pnas.1717900115
More Details
(2018) Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.
PLoS Genet 14(3), e1007267.
10.1371/journal.pgen.1007267
More Details
(2018) Extensive Genetic Diversity is Present within North American Switchgrass Germplasm.
Plant Genome 11(1).
10.3835/plantgenome2017.06.0055
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(2018) The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history.
Elife 7.
10.7554/eLife.36426
More Details
(2018) Ecosystem Fabrication (EcoFAB) Protocols for The Construction of Laboratory Ecosystems Designed to Study Plant-microbe Interactions.
J Vis Exp (134).
10.3791/57170
More Details
(2018) A mosaic monoploid reference sequence for the highly complex genome of sugarcane.
Nat Commun 9(1), 2638.
10.1038/s41467-018-05051-5
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(2018) Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae).
BMC Genomics 19(1), 792.
10.1186/s12864-018-5179-7
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(2018) SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae.
Plant J 96(3), 532-545.
10.1111/tpj.14047
More Details
(2018) Climate-smart crops with enhanced photosynthesis.
J Exp Bot 69(16), 3801-3809.
10.1093/jxb/ery213
More Details
(2018) The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Plant J 93(3), 515-533.
10.1111/tpj.13801
More Details
(2018) The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
Nature Communications 9(1), 5213.
10.1038/s41467-018-07669-x
More Details
(2018) Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii.
Biotechnol Biofuels 11, 25.
10.1186/s13068-018-1033-z
More Details
(2018) Quantitative trait loci for cell wall composition traits measured using near-infrared spectroscopy in the model C4 perennial grass Panicum hallii.
Biotechnol Biofuels 11, 25.
10.1186/s13068-018-1033-z
More Details
(2018) Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree.
Proc Natl Acad Sci U S A 115(45), 11573-11578.
10.1073/pnas.1804428115
More Details
(2018) Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis.
Gene 663, 165-177.
10.1016/j.gene.2018.04.024
More Details
(2018) The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.
Plant J 95(1), 168-182.
10.1111/tpj.13940
More Details
(2018) Salt tolerance of two perennial grass Brachypodium sylvaticum accessions.
Plant Mol Biol 96(3), 305-314.
10.1007/s11103-017-0696-3
More Details
(2018) Multi-lab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass.
New Phytologist 0.
10.1111/nph.15662
More Details
(2018) Association mapping by aerial drone reveals 213 genetic associations for Sorghum bicolor biomass traits under drought.
BMC Genomics 19(1), 679.
10.1186/s12864-018-5055-5
More Details
(2018) Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp).
Gates Open Res 2, 7.
10.12688/gatesopenres.12777.1
More Details
(2018) Assembled genomic and tissue-specific transcriptomic data resources for two genetically distinct lines of Cowpea ( Vigna unguiculata (L.) Walp).
Gates Open Res 2, 7.
10.12688/gatesopenres.12777.1
More Details
(2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.
Nat Genet 50(2), 285-296.
10.1038/s41588-018-0040-0
More Details
(2018) Evolution and expression of core SWI/SNF genes in red algae.
J Phycol 54(6), 879-887.
10.1111/jpy.12795
More Details
(2018) Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon.
Genome Biol Evol 10(1), 304-318.
10.1093/gbe/evx276
More Details
(2018) Hardwood Tree Genomics: Unlocking Woody Plant Biology.
Frontiers in Plant Science 9, 9.
10.3389/fpls.2018.01799
More Details
(2018) Broad spectrum developmental role of Brachypodium AUX1.
New Phytol .
10.1111/nph.15332
More Details
(2018) Genomic variation in 3,010 diverse accessions of Asian cultivated rice.
Nature 557(7703), 43-49.
10.1038/s41586-018-0063-9
More Details
(2018) The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.
New Phytol 217(1), 16-25.
10.1111/nph.14860
More Details
(2018) Genomics of the origin and evolution of Citrus.
Nature 554(7692), 311-316.
10.1038/nature25447
More Details
(2018) A 5-enolpyruvylshikimate 3-phosphate synthase functions as a transcriptional repressor in Populus.
The Plant Cell .
10.1105/tpc.18.00168
More Details
(2018) Amplification and adaptation of centromeric repeats in polyploid switchgrass species.
New Phytol .
10.1111/nph.15098
More Details
(2018) Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus.
New Phytol .
10.1111/nph.15297
More Details
(2018) Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus.
New Phytol 220(2), 502-516.
10.1111/nph.15297
More Details
(2018) Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).
Mol Genet Genomics .
10.1007/s00438-018-1473-y
More Details
(2018) Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).
Mol Genet Genomics 293(6), 1437-1452.
10.1007/s00438-018-1473-y
More Details
(2018) Analysis of Brachypodium genomes with genome-wide optical maps.
Genome .
10.1139/gen-2018-0013
More Details
(2018) Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.
Biotechnol Biofuels 11, 170.
10.1186/s13068-018-1167-z
More Details
2017
(2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
Cell 171(2), 287-304 e15.
10.1016/j.cell.2017.09.030
More Details
(2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta).
Proc Natl Acad Sci U S A 114(31), E6361-E6370.
10.1073/pnas.1703088114
More Details
(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
More Details
(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
More Details
(2017) Genome-wide identification of bacterial plant colonization genes.
PLoS Biol 15(9), e2002860.
10.1371/journal.pbio.2002860
More Details
(2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Front Plant Sci 8, 184.
10.3389/fpls.2017.00184
More Details
(2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Nat Commun 8(1), 2184.
10.1038/s41467-017-02292-8
More Details
(2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Nat Commun 8(1), 2184.
10.1038/s41467-017-02292-8
More Details
(2017) Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.
New Phytol 214(2), 808-819.
10.1111/nph.14421
More Details
(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
10.1111/tpj.13582
More Details
(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
10.1111/tpj.13582
More Details
(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
https://www.nature.com/articles/nplants201754#supplementary-information
More Details
(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
https://www.nature.com/articles/nplants201754#supplementary-information
More Details
(2017) The P. patens chromosome-scale assembly reveals moss genome structure and evolution.
Plant J .
10.1111/tpj.13801
More Details
(2017) Young inversion with multiple linked QTLs under selection in a hybrid zone.
Nature Ecology & Evolution 1, 0119.
10.1038/s41559-017-0119
More Details
(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
More Details
(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
More Details
(2017) Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.
Stand Genomic Sci 12, 78.
10.1186/s40793-017-0292-9
More Details
(2017) Rice SNP-seek database update: new SNPs, indels, and queries.
Nucleic Acids Res 45(D1), D1075-D1081.
10.1093/nar/gkw1135
More Details
(2017) QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert.
Theor Appl Genet .
10.1007/s00122-017-2943-z
More Details
(2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
Plant J .
10.1111/tpj.13781
More Details
(2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
Plant J .
10.1111/tpj.13781
More Details
(2017) QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii.
Front Plant Sci 8, 1168.
10.3389/fpls.2017.01168
More Details
(2017) Cross-species functional diversity within the PIN auxin efflux protein family.
Elife 6.
10.7554/eLife.31804
More Details
(2017) Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18.
Genome Announc 5(43).
10.1128/genomeA.01105-17
More Details
(2017) Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.
Sci Rep 7(1), 17212.
10.1038/s41598-017-17454-3
More Details
(2017) Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata.
Science 355(6330), 1215-1218.
10.1126/science.aal3254
More Details
(2017) Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes.
New Phytol .
10.1111/nph.14926
More Details
(2017) Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes.
New Phytol .
10.1111/nph.14926
More Details
(2017) Sub genome anchored physical frameworks of the allotetraploid Upland cotton (Gossypium hirsutum L.) genome, and an approach toward reference-grade assemblies of polyploids.
Sci Rep 7(1), 15274.
10.1038/s41598-017-14885-w
More Details
(2017) Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon.
Genome Biol Evol .
10.1093/gbe/evx276
More Details
(2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.
New Phytol .
10.1111/nph.14448
More Details
(2017) The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
BMC Genomics 18(1), 225.
10.1186/s12864-017-3606-9
More Details
(2017) Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
Plant Physiol 173(1), 269-279.
10.1104/pp.16.01178
More Details
(2017) The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.
Nat Commun 8(1), 1899.
10.1038/s41467-017-01491-7
More Details
(2017) Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion.
Green Chemistry 19(22), 5467-5478.
10.1039/c7gc02219k
More Details
2016
(2016) On the origin and evolutionary consequences of gene body DNA methylation.
Proc Natl Acad Sci U S A 113(32), 9111-6.
10.1073/pnas.1604666113
More Details
(2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.
Nat Biotechnol 34(5), 562-70.
10.1038/nbt.3535
More Details
(2016) Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum.
Front Plant Sci 7, 716.
10.3389/fpls.2016.00716
More Details
(2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.
PLoS One 11(12), e0167171.
10.1371/journal.pone.0167171
More Details
(2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.
BMC Genomics 17(1), 892.
10.1186/s12864-016-3201-5
More Details
(2016) Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.
New Phytol .
10.1111/nph.14101
More Details
(2016) Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.
PLoS One 11(3), e0151883.
10.1371/journal.pone.0151883
More Details
(2016) Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation.
Mol Plant .
10.1016/j.molp.2016.03.009
More Details
(2016) Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.
Genome Res 26(4), 510-8.
10.1101/gr.198135.115
More Details
(2016) Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean.
Plant Genome 9(2).
10.3835/plantgenome2015.09.0092
More Details
(2016) Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean.
Plant Genome 9(3).
10.3835/plantgenome2016.02.0012
More Details
(2016) Widespread natural variation of DNA methylation within angiosperms.
Genome Biol 17(1), 194.
10.1186/s13059-016-1059-0
More Details
(2016) The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Nature 530(7590), 331-5.
10.1038/nature16548
More Details
(2016) BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses.
Front Plant Sci 7, 55.
10.3389/fpls.2016.00055
More Details
(2016) A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem.
Elife 5.
10.7554/eLife.20522
More Details
(2016) Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
Proc Natl Acad Sci U S A .
10.1073/pnas.1606728113
More Details
(2016) Brachypodium distachyon genotypes vary in resistance to Rhizoctonia solani AG8.
Functional Plant Biology 43(2), 189-198.
10.1071/Fp15244
More Details
(2016) The Sphagnum Genome Project: A New Model for Ecological and Evolutionary Genomics.
Genomes and Evolution of Charophytes, Bryophytes, Lycophytes and Ferns 78, 167-187.
10.1016/bs.abr.2016.01.003
More Details
(2016) Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.
BMC Genomics 17(1), 33.
10.1186/s12864-015-2344-0
More Details
(2016) Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR), a regulator of ABA responses unique to basal land plants and required for desiccation tolerance.
Plant Cell .
10.1105/tpc.16.00091
More Details
(2016) Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.
BMC Genomics 17(1), 267.
10.1186/s12864-016-2585-6
More Details
(2016) Genome-wide analysis of lectin receptor-like kinases in Populus.
BMC Genomics 17, 699.
10.1186/s12864-016-3026-2
More Details
2015
(2015) High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations.
G3-Genes Genomes Genetics 5(1), 133-144.
DOI 10.1534/g3.114.015008
More Details
(2015) Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
Annu Rev Plant Biol 66, 465-85.
10.1146/annurev-arplant-042811-105528
More Details
(2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.
Genome Biol 16, 26.
10.1186/s13059-015-0582-8
More Details
(2015) Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments.
Plant Physiol 168(3), 953-67.
10.1104/pp.15.00095
More Details
(2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing.
Plant J .
10.1111/tpj.13041
More Details
(2015) High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing.
The Plant Genome 8(2).
10.3835/plantgenome2014.10.0065
More Details
(2015) Brachypodium as an emerging model for cereal-pathogen interactions.
Ann Bot 115(5), 717-31.
10.1093/aob/mcv010
More Details
(2015) Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.
New Phytol .
10.1111/nph.13639
More Details
(2015) Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).
Proteomics .
10.1002/pmic.201400487
More Details
(2015) A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation.
Mol Plant .
10.1016/j.molp.2015.11.004
More Details
(2015) Identification and distribution of the NBS-LRR gene family in the Cassava genome.
BMC Genomics 16, 360.
10.1186/s12864-015-1554-9
More Details
(2015) High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.
BMC Genomics 16, 24.
10.1186/s12864-015-1215-z
More Details
(2015) Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Plant J .
10.1111/tpj.12959
More Details
(2015) GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.
Elife 4.
10.7554/eLife.07597
More Details
(2015) Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.
PLoS Pathog 11(3), e1004809.
10.1371/journal.ppat.1004809
More Details
(2015) Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?.
Sci Rep 5, 10134.
10.1038/srep10134
More Details
(2015) Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes.
Bioenerg Res , 1-14.
10.1007/s12155-015-9667-1
More Details
(2015) The BioMart community portal: an innovative alternative to large, centralized data repositories.
Nucleic Acids Res 43(W1), W589-98.
10.1093/nar/gkv350
More Details
(2015) SNP Assay Development for Linkage Map Construction, Anchoring Whole Genome Sequence and Other Genetic and Genomic Applications in Common Bean.
G3 (Bethesda) .
10.1534/g3.115.020594
More Details
(2015) A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.
New Phytol 207(3), 491-504.
10.1111/nph.13393
More Details
2014
(2014) High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.
New Phytol .
10.1111/nph.13150
More Details
(2014) A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number.
Genetics 196(3), 829-40.
10.1534/genetics.113.160655
More Details
(2014) The Chlamydomonas genome project: a decade on.
Trends Plant Sci .
10.1016/j.tplants.2014.05.008
More Details
(2014) Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass.
Plant Genome 7(2).
Doi 10.3835/Plantgenome2013.12.0041
More Details
(2014) Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations.
Nat Genet 46(10), 1089-96.
10.1038/ng.3075
More Details
(2014) Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris).
Front Plant Sci 5, 339.
10.3389/fpls.2014.00339
More Details
(2014) Genome Diversity in Brachypodium distachyon: Deep Sequencing of Highly Diverse Inbred Lines.
Plant J .
10.1111/tpj.12569
More Details
(2014) Insights into the maize pan-genome and pan-transcriptome.
Plant Cell 26(1), 121-35.
10.1105/tpc.113.119982
More Details
(2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.
Science 345(6194), 1251788.
10.1126/science.1251788
More Details
(2014) Fuzzy GIS-based multi-criteria evaluation for US Agave production as a bioenergy feedstock.
GCB Bioenergy .
10.1111/gcbb.12116
More Details
(2014) The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.
New Phytol .
10.1111/nph.13027
More Details
(2014) Ancient hybridizations among the ancestral genomes of bread wheat.
Science 345(6194), 1250092.
10.1126/science.1250092
More Details
(2014) A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing.
Sci Rep 4, 4519.
10.1038/srep04519
More Details
(2014) The genome of Eucalyptus grandis.
Nature 509(7505), 356-62.
10.1038/nature13308
More Details
(2014) Genome interplay in the grain transcriptome of hexaploid bread wheat.
Science 345(6194), 1250091.
10.1126/science.1250091
More Details
(2014) A reference genome for common bean and genome-wide analysis of dual domestications..
Nature 46(7), 707-713.
10.1038/ng.3008
More Details
(2014) The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle.
Nat Commun 5, 3311.
10.1038/ncomms4311
More Details
(2014) Sphagnum physiology in the context of changing climate: Emergent influences of genomics, modeling and host-microbiome interactions on understanding ecosystem function.
Plant Cell Environ .
10.1111/pce.12458
More Details
(2014) Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
Nat Biotechnol 32(7), 656-62.
10.1038/nbt.2906
More Details
2013
(2013) A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes.
BMC Genomics 14, 864.
10.1186/1471-2164-14-864
More Details
(2013) A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.
Mol Ecol Resour 13(2), 306-23.
10.1111/1755-0998.12056
More Details
(2013) De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.
BMC Genomics 14, 563.
10.1186/1471-2164-14-563
More Details
(2013) Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing.
Proc Natl Acad Sci U S A 110(48), 19478-82.
10.1073/pnas.1319032110
More Details
(2013) Identification and characterization of functional centromeres of the common bean.
Plant J 76(1), 47-60.
10.1111/tpj.12269
More Details
(2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Plant J 76(4), 718-27.
10.1111/tpj.12319
More Details
(2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions.
Proc Natl Acad Sci U S A 110(16), 6548-53.
10.1073/pnas.1302837110
More Details
(2013) Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature 499(7457), 209-13.
10.1038/nature12221
More Details
(2013) Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.
Science 342(6165), 1468-73.
10.1126/science.1246275
More Details
(2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
Nat Genet 45(7), 831-5.
10.1038/ng.2669
More Details
(2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
Nat Genet 45(5), 487-94.
10.1038/ng.2586
More Details
(2013) Revisiting the sequencing of the first tree genome: Populus trichocarpa.
Tree Physiol 33(4), 357-64.
10.1093/treephys/tps081
More Details
(2013) The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Front Plant Sci 4, 46.
10.3389/fpls.2013.00046
More Details
(2013) Cyanobacterial-based approaches to improving photosynthesis in plants.
J Exp Bot 64(3), 787-98.
10.1093/jxb/ers294
More Details
(2013) Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).
Plant J 74(1), 160-73.
10.1111/tpj.12104
More Details
2012
(2012) Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics.
Journal of Proteome Research 11(1), 449-460.
Doi 10.1021/Pr200851y
More Details
(2012) Reference genome sequence of the model plant Setaria.
Nat Biotechnol 30(6), 555-61.
10.1038/nbt.2196
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(2012) Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.
Journal of Phycology 48(6), 1328-1342.
DOI 10.1111/j.1529-8817.2012.01229.x
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(2012) Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems.
Plant Physiology 158(4), 2001-2012.
DOI 10.1104/pp.112.193896
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(2012) Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.
PLoS One 7(6), e38333.
10.1371/journal.pone.0038333
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(2012) Phytozome: a comparative platform for green plant genomics.
Nucleic Acids Research 40(D1), D1178-D1186.
Doi 10.1093/Nar/Gkr944
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(2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks.
Curr Biol 22(1), 83-90.
10.1016/j.cub.2011.11.045
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(2012) Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species.
Tree Genetics & Genomes 8(6), 1477-1485.
Doi 10.1007/S11295-012-0547-Y
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(2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature 492(7429), 423-7.
10.1038/nature11798
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(2012) The Cassava Genome: Current Progress, Future Directions.
Trop Plant Biol 5(1), 88-94.
10.1007/s12042-011-9088-z
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(2012) A genome-wide survey of switchgrass genome structure and organization.
PLoS One 7(4), e33892.
10.1371/journal.pone.0033892
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(2012) Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.
New Phytol 196(3), 713-25.
10.1111/j.1469-8137.2012.04258.x
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(2012) A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy.
Bmc Genomics 13.
Artn 142Doi 10.1186/1471-2164-13-142
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2011
(2011) Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.
New Phytologist 192(1), 151-163.
DOI 10.1111/j.1469-8137.2011.03786.x
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(2011) The Switchgrass Genome: Tools and Strategies.
Plant Genome 4(3), 273-282.
DOI 10.3835/plantgenome2011.10.0026
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(2011) Meraculous: de novo genome assembly with short paired-end reads.
PLoS One 6(8), e23501.
10.1371/journal.pone.0023501
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(2011) Chemical, ultrastructural and supramolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance.
Energy & Environmental Science 4(12), 4962-4971.
Doi 10.1039/C1ee02073k
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(2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar.
Proc Natl Acad Sci U S A 108(26), 10756-61.
10.1073/pnas.1104713108
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(2011) The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.
J Biol Chem 286(24), 21427-39.
10.1074/jbc.M111.233734
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(2011) Lignin content in natural Populus variants affects sugar release.
Proc Natl Acad Sci U S A 108(15), 6300-5.
10.1073/pnas.1009252108
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(2011) Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants.
Plant Cell Physiol 52(2), 317-32.
10.1093/pcp/pcq188
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(2011) Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics.
Plant Science 181(6), 675-687.
DOI 10.1016/j.plantsci.2011.01.020
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(2011) Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis.
Plant Science 181(6), 688-695.
DOI 10.1016/j.plantsci.2011.01.021
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2010
(2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.
Science 327(5963), 302-5.
10.1126/science.1182213
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(2010) The dynamic genome of Hydra.
Nature 464(7288), 592-596.
Doi 10.1038/Nature08830
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(2010) Evolution of an expanded sex-determining locus in Volvox.
Science 328(5976), 351-4.
10.1126/science.1186222
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(2010) The genome of Naegleria gruberi illuminates early eukaryotic versatility.
Cell 140(5), 631-42.
10.1016/j.cell.2010.01.032
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(2010) High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.
Bmc Genomics 11.
Artn 38Doi 10.1186/1471-2164-11-38
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(2010) Genome sequencing and analysis of the model grass Brachypodium distachyon.
Nature 463(7282), 763-8.
10.1038/nature08747
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(2010) Parallel evolution of nacre building gene sets in molluscs.
Mol Biol Evol 27(3), 591-608.
10.1093/molbev/msp278
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(2010) Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.
Proceedings of the National Academy of Sciences of the United States of America 107(51), 22032-22037.
DOI 10.1073/pnas.1009526107
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(2010) Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.
Science 329(5988), 223-6.
10.1126/science.1188800
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(2010) Genome sequence of the palaeopolyploid soybean.
Nature 463(7278), 178-83.
10.1038/nature08670
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(2010) Genome sequence of the palaeopolyploid soybean.
Nature 463(7278), 178-83.
10.1038/nature08670
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(2010) Early evolution of the LIM homeobox gene family.
BMC Biol 8, 4.
10.1186/1741-7007-8-4
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(2010) Antisense down-regulation of 4CL expression alters lignification, tree growth, and saccharification potential of field-grown poplar.
Plant Physiol 154(2), 874-86.
10.1104/pp.110.159269
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(2010) SoyDB: a knowledge database of soybean transcription factors.
BMC Plant Biol 10, 14.
10.1186/1471-2229-10-14
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2009
(2009) A recommendation for naming transcription factor proteins in the grasses.
Plant Physiol 149(1), 4-6.
10.1104/pp.108.128504
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(2009) Old can be new again: HAPPY whole genome sequencing, mapping and assembly.
International Journal of Biological Sciences 5(4), 298-303.
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(2009) Domain shuffling and the evolution of vertebrates.
Genome Res 19(8), 1393-403.
10.1101/gr.087072.108
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(2009) Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian.
Dev Neurobiol 69(4), 235-54.
10.1002/dneu.20698
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(2009) The Sorghum bicolor genome and the diversification of grasses.
Nature 457(7229), 551-6.
10.1038/nature07723
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(2009) Brachypodium distachyon: a New Model for Biomass Crops.
In Vitro Cellular & Developmental Biology-Animal 45, S6-S6.
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2008
(2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
Nature 456(7219), 239-44.
10.1038/nature07410
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(2008) Analysis of saccharification in Brachypodium distachyon stems under mild conditions of hydrolysis.
Biotechnol Biofuels 1(1), 15.
10.1186/1754-6834-1-15
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(2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.
Nature 455(7217), 1193-7.
10.1038/nature07415
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(2008) Promoter elements associated with RNA Pol 11 stalling in the Drosophila embryo.
Proceedings of the National Academy of Sciences of the United States of America 105(22), 7762-7767.
DOI 10.1073/pnas.0802406105
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(2008) The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
Genome Research 18(7), 1100-1111.
DOI 10.1101/gr.073676.107
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(2008) Conservation of linkage and evolution of developmental function within the Tbx2/3/4/5 subfamily of T-box genes: implications for the origin of vertebrate limbs.
Dev Genes Evol 218(11-12), 613-28.
10.1007/s00427-008-0249-5
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(2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
Nature 451(7180), 783-788.
Doi 10.1038/Nature06617
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(2008) Genesis and expansion of metazoan transcription factor gene classes.
Mol Biol Evol 25(5), 980-96.
10.1093/molbev/msn047
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(2008) Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism.
Proc Natl Acad Sci U S A 105(39), 14802-7.
10.1073/pnas.0805946105
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(2008) The amphioxus genome and the evolution of the chordate karyotype.
Nature 453(7198), 1064-71.
10.1038/nature06967
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(2008) Comparative analysis of the transcriptomes of Populus trichocarpa and Arabidopsis thaliana suggests extensive evolution of gene expression regulation in angiosperms.
New Phytol 180(2), 408-20.
10.1111/j.1469-8137.2008.02586.x
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(2008) Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
Bmc Genomics 9.
Artn 57Doi 10.1186/1471-2164-9-57
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(2008) The genome sequence of Bifidobacterium longum subsp infantis reveals adaptations for milk utilization within the infant microbiome.
Proceedings of the National Academy of Sciences of the United States of America 105(48), 18964-18969.
DOI 10.1073/pnas.0809584105
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(2008) Rapid whole-genome mutational profiling using next-generation sequencing technologies.
Genome Research 18(10), 1638-1642.
DOI 10.1101/gr.077776.108
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(2008) The Trichoplax genome and the nature of placozoans.
Nature 454(7207), 955-60.
10.1038/nature07191
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(2008) Genome structure and emerging evidence of an incipient sex chromosome in Populus.
Genome Res 18(3), 422-30.
10.1101/gr.7076308
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2007
(2007) Novel metabolism in Chlamydomonas through the lens of genomics.
Current Opinion in Plant Biology 10(2), 190-198.
Doi 10.1016/J.Pbi.2007.01.012
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(2007) Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa.
Bmc Plant Biology 7.
Artn 59Doi 10.1186/1471-2229-7-59
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(2007) A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
Plant Journal 50(6), 1063-1078.
Doi 10.1111/J.1365-313x.2007.03112.X
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(2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions.
Science 318(5848), 245-251.
Doi 10.1126/Science.1143609
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(2007) Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana.
Journal of Phycology 43(3), 585-604.
Doi 10.1111/J.1529-8817.2007.00342.X
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2006
(2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science 313(5793), 1596-1604.
Doi 10.1126/Science.1128691
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2004
(2004) The sequence and analysis of duplication-rich human chromosome 16.
Nature 432(7020), 988-94.
10.1038/nature03187
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(2004) The DNA sequence and comparative analysis of human chromosome 5.
Nature 431(7006), 268-74.
10.1038/nature02919
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Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification.
Theoretical and Applied Genetics , 1-14.
10.1007/s00122-022-04030-1
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance.
Planta 255(2), 37.
10.1007/s00425-021-03814-x
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