2018
(2018) The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.
New Phytol 217(1), 16-25.
10.1111/nph.14860
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2017
(2017) Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
Cell 171(2), 287-304 e15.
10.1016/j.cell.2017.09.030
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(2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta).
Proc Natl Acad Sci U S A 114(31), E6361-E6370.
10.1073/pnas.1703088114
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(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
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(2017) Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa).
Genome Announc 5(16).
10.1128/genomeA.00215-17
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(2017) Genome-wide identification of bacterial plant colonization genes.
PLoS Biol 15(9), e2002860.
10.1371/journal.pbio.2002860
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(2017) Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
Front Plant Sci 8, 184.
10.3389/fpls.2017.00184
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(2017) Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
Nat Commun 8(1), 2184.
10.1038/s41467-017-02292-8
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(2017) Divergent cytosine DNA methylation patterns in single-cell, soybean root hairs.
New Phytol 214(2), 808-819.
10.1111/nph.14421
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(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
10.1111/tpj.13582
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(2017) Sequencing and functional validation of the JGI Brachypodium distachyon T-DNA collection.
Plant J .
10.1111/tpj.13582
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(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
https://www.nature.com/articles/nplants201754#supplementary-information
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(2017) Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.
Nat Plants 3, 17054.
10.1038/nplants.2017.54
https://www.nature.com/articles/nplants201754#supplementary-information
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(2017) The P. patens chromosome-scale assembly reveals moss genome structure and evolution.
Plant J .
10.1111/tpj.13801
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(2017) Young inversion with multiple linked QTLs under selection in a hybrid zone.
Nature Ecology & Evolution 1, 0119.
10.1038/s41559-017-0119
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(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
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(2017) The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.
Plant Cell 29(6), 1218-1231.
10.1105/tpc.17.00154
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(2017) Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.
Stand Genomic Sci 12, 78.
10.1186/s40793-017-0292-9
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(2017) Rice SNP-seek database update: new SNPs, indels, and queries.
Nucleic Acids Res 45(D1), D1075-D1081.
10.1093/nar/gkw1135
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(2017) QTL associated with resistance to cassava brown streak and cassava mosaic diseases in a bi-parental cross of two Tanzanian farmer varieties, Namikonga and Albert.
Theor Appl Genet .
10.1007/s00122-017-2943-z
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(2017) The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.
Plant J .
10.1111/tpj.13781
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(2017) QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii.
Front Plant Sci 8, 1168.
10.3389/fpls.2017.01168
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(2017) Cross-species functional diversity within the PIN auxin efflux protein family.
Elife 6.
10.7554/eLife.31804
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(2017) Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18.
Genome Announc 5(43).
10.1128/genomeA.01105-17
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(2017) Transcriptome analysis of Brachypodium during fungal pathogen infection reveals both shared and distinct defense responses with wheat.
Sci Rep 7(1), 17212.
10.1038/s41598-017-17454-3
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(2017) Mobile MUTE specifies subsidiary cells to build physiologically improved grass stomata.
Science 355(6330), 1215-1218.
10.1126/science.aal3254
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(2017) Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes.
New Phytol .
10.1111/nph.14926
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(2017) Recent activity in expanding populations and purifying selection have shaped transposable element landscapes across natural accessions of the Mediterranean grass Brachypodium distachyon.
Genome Biol Evol .
10.1093/gbe/evx276
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(2017) DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.
New Phytol .
10.1111/nph.14448
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(2017) The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
BMC Genomics 18(1), 225.
10.1186/s12864-017-3606-9
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(2017) Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
Plant Physiol 173(1), 269-279.
10.1104/pp.16.01178
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(2017) The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.
Nat Commun 8(1), 1899.
10.1038/s41467-017-01491-7
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2016
(2016) On the origin and evolutionary consequences of gene body DNA methylation.
Proc Natl Acad Sci U S A 113(32), 9111-6.
10.1073/pnas.1604666113
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(2016) Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity.
Nat Biotechnol 34(5), 562-70.
10.1038/nbt.3535
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(2016) Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum.
Front Plant Sci 7, 716.
10.3389/fpls.2016.00716
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(2016) Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.
PLoS One 11(12), e0167171.
10.1371/journal.pone.0167171
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(2016) Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.
BMC Genomics 17(1), 892.
10.1186/s12864-016-3201-5
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(2016) Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.
New Phytol .
10.1111/nph.14101
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(2016) Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.
PLoS One 11(3), e0151883.
10.1371/journal.pone.0151883
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(2016) Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation.
Mol Plant .
10.1016/j.molp.2016.03.009
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(2016) Drought responsive gene expression regulatory divergence between upland and lowland ecotypes of a perennial C4 grass.
Genome Res 26(4), 510-8.
10.1101/gr.198135.115
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(2016) Sequence-Based Introgression Mapping Identifies Candidate White Mold Tolerance Genes in Common Bean.
Plant Genome 9(2).
10.3835/plantgenome2015.09.0092
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(2016) Genome-Wide Association Study Identifies Candidate Loci Underlying Agronomic Traits in a Middle American Diversity Panel of Common Bean.
Plant Genome 9(3).
10.3835/plantgenome2016.02.0012
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(2016) Widespread natural variation of DNA methylation within angiosperms.
Genome Biol 17(1), 194.
10.1186/s13059-016-1059-0
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(2016) The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea.
Nature 530(7590), 331-5.
10.1038/nature16548
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(2016) BdCESA7, BdCESA8, and BdPMT Utility Promoter Constructs for Targeted Expression to Secondary Cell-Wall-Forming Cells of Grasses.
Front Plant Sci 7, 55.
10.3389/fpls.2016.00055
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(2016) A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem.
Elife 5.
10.7554/eLife.20522
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(2016) Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
Proc Natl Acad Sci U S A .
10.1073/pnas.1606728113
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(2016) Brachypodium distachyon genotypes vary in resistance to Rhizoctonia solani AG8.
Functional Plant Biology 43(2), 189-198.
10.1071/Fp15244
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(2016) The Sphagnum Genome Project: A New Model for Ecological and Evolutionary Genomics.
Genomes and Evolution of Charophytes, Bryophytes, Lycophytes and Ferns 78, 167-187.
10.1016/bs.abr.2016.01.003
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(2016) Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.
BMC Genomics 17(1), 33.
10.1186/s12864-015-2344-0
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(2016) Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE (ANR), a regulator of ABA responses unique to basal land plants and required for desiccation tolerance.
Plant Cell .
10.1105/tpc.16.00091
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(2016) Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.
BMC Genomics 17(1), 267.
10.1186/s12864-016-2585-6
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(2016) Genome-wide analysis of lectin receptor-like kinases in Populus.
BMC Genomics 17, 699.
10.1186/s12864-016-3026-2
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2015
(2015) High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations.
G3-Genes Genomes Genetics 5(1), 133-144.
DOI 10.1534/g3.114.015008
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(2015) Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
Annu Rev Plant Biol 66, 465-85.
10.1146/annurev-arplant-042811-105528
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(2015) A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.
Genome Biol 16, 26.
10.1186/s13059-015-0582-8
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(2015) Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments.
Plant Physiol 168(3), 953-67.
10.1104/pp.15.00095
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(2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing.
Plant J .
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(2015) Diversity and Population Structure of Northern Switchgrass as Revealed Through Exome Capture Sequencing.
Plant J .
10.1111/tpj.13041
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(2015) High-Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping-by-Sequencing.
The Plant Genome 8(2).
10.3835/plantgenome2014.10.0065
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(2015) Brachypodium as an emerging model for cereal-pathogen interactions.
Ann Bot 115(5), 717-31.
10.1093/aob/mcv010
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(2015) Examining the cause of high inbreeding depression: analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis.
New Phytol .
10.1111/nph.13639
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(2015) Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).
Proteomics .
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(2015) A Xyloglucan Backbone 6-O-Acetyltransferase from Brachypodium distachyon Modulates Xyloglucan Xylosylation.
Mol Plant .
10.1016/j.molp.2015.11.004
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(2015) Identification and distribution of the NBS-LRR gene family in the Cassava genome.
BMC Genomics 16, 360.
10.1186/s12864-015-1554-9
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(2015) High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus.
BMC Genomics 16, 24.
10.1186/s12864-015-1215-z
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(2015) Sequencing of 15,622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.
Plant J .
10.1111/tpj.12959
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(2015) GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.
Elife 4.
10.7554/eLife.07597
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(2015) Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.
PLoS Pathog 11(3), e1004809.
10.1371/journal.ppat.1004809
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(2015) Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?.
Sci Rep 5, 10134.
10.1038/srep10134
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(2015) Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes.
Bioenerg Res , 1-14.
10.1007/s12155-015-9667-1
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(2015) The BioMart community portal: an innovative alternative to large, centralized data repositories.
Nucleic Acids Res 43(W1), W589-98.
10.1093/nar/gkv350
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(2015) SNP Assay Development for Linkage Map Construction, Anchoring Whole Genome Sequence and Other Genetic and Genomic Applications in Common Bean.
G3 (Bethesda) .
10.1534/g3.115.020594
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(2015) A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.
New Phytol 207(3), 491-504.
10.1111/nph.13393
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2014
(2014) High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.
New Phytol .
10.1111/nph.13150
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(2014) A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number.
Genetics 196(3), 829-40.
10.1534/genetics.113.160655
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(2014) The Chlamydomonas genome project: a decade on.
Trends Plant Sci .
10.1016/j.tplants.2014.05.008
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(2014) Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass.
Plant Genome 7(2).
Doi 10.3835/Plantgenome2013.12.0041
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(2014) Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations.
Nat Genet 46(10), 1089-96.
10.1038/ng.3075
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(2014) Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris).
Front Plant Sci 5, 339.
10.3389/fpls.2014.00339
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(2014) Genome Diversity in Brachypodium distachyon: Deep Sequencing of Highly Diverse Inbred Lines.
Plant J .
10.1111/tpj.12569
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(2014) Insights into the maize pan-genome and pan-transcriptome.
Plant Cell 26(1), 121-35.
10.1105/tpc.113.119982
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(2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome.
Science 345(6194), 1251788.
10.1126/science.1251788
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(2014) Fuzzy GIS-based multi-criteria evaluation for US Agave production as a bioenergy feedstock.
GCB Bioenergy .
10.1111/gcbb.12116
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(2014) The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii.
New Phytol .
10.1111/nph.13027
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(2014) Ancient hybridizations among the ancestral genomes of bread wheat.
Science 345(6194), 1250092.
10.1126/science.1250092
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(2014) A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing.
Sci Rep 4, 4519.
10.1038/srep04519
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(2014) The genome of Eucalyptus grandis.
Nature 509(7505), 356-62.
10.1038/nature13308
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(2014) Genome interplay in the grain transcriptome of hexaploid bread wheat.
Science 345(6194), 1250091.
10.1126/science.1250091
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(2014) A reference genome for common bean and genome-wide analysis of dual domestications..
Nature 46(7), 707-713.
10.1038/ng.3008
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(2014) The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle.
Nat Commun 5, 3311.
10.1038/ncomms4311
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(2014) Sphagnum physiology in the context of changing climate: Emergent influences of genomics, modeling and host-microbiome interactions on understanding ecosystem function.
Plant Cell Environ .
10.1111/pce.12458
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(2014) Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
Nat Biotechnol 32(7), 656-62.
10.1038/nbt.2906
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2013
(2013) A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes.
BMC Genomics 14, 864.
10.1186/1471-2164-14-864
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(2013) A 34K SNP genotyping array for Populus trichocarpa: design, application to the study of natural populations and transferability to other Populus species.
Mol Ecol Resour 13(2), 306-23.
10.1111/1755-0998.12056
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(2013) De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.
BMC Genomics 14, 563.
10.1186/1471-2164-14-563
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(2013) Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing.
Proc Natl Acad Sci U S A 110(48), 19478-82.
10.1073/pnas.1319032110
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(2013) Identification and characterization of functional centromeres of the common bean.
Plant J 76(1), 47-60.
10.1111/tpj.12269
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(2013) Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).
Plant J 76(4), 718-27.
10.1111/tpj.12319
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(2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions.
Proc Natl Acad Sci U S A 110(16), 6548-53.
10.1073/pnas.1302837110
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(2013) Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature 499(7457), 209-13.
10.1038/nature12221
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(2013) Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.
Science 342(6165), 1468-73.
10.1126/science.1246275
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(2013) The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
Nat Genet 45(7), 831-5.
10.1038/ng.2669
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(2013) The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
Nat Genet 45(5), 487-94.
10.1038/ng.2586
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(2013) Revisiting the sequencing of the first tree genome: Populus trichocarpa.
Tree Physiol 33(4), 357-64.
10.1093/treephys/tps081
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(2013) The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Front Plant Sci 4, 46.
10.3389/fpls.2013.00046
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(2013) Cyanobacterial-based approaches to improving photosynthesis in plants.
J Exp Bot 64(3), 787-98.
10.1093/jxb/ers294
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(2013) Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).
Plant J 74(1), 160-73.
10.1111/tpj.12104
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2012
(2012) Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics.
Journal of Proteome Research 11(1), 449-460.
Doi 10.1021/Pr200851y
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(2012) Reference genome sequence of the model plant Setaria.
Nat Biotechnol 30(6), 555-61.
10.1038/nbt.2196
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(2012) Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.
Journal of Phycology 48(6), 1328-1342.
DOI 10.1111/j.1529-8817.2012.01229.x
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(2012) Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems.
Plant Physiology 158(4), 2001-2012.
DOI 10.1104/pp.112.193896
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(2012) Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.
PLoS One 7(6), e38333.
10.1371/journal.pone.0038333
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(2012) Phytozome: a comparative platform for green plant genomics.
Nucleic Acids Research 40(D1), D1178-D1186.
Doi 10.1093/Nar/Gkr944
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(2012) A genome-wide SNP genotyping array reveals patterns of global and repeated species-pair divergence in sticklebacks.
Curr Biol 22(1), 83-90.
10.1016/j.cub.2011.11.045
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(2012) Conifer DBMagic: a database housing multiple de novo transcriptome assemblies for 12 diverse conifer species.
Tree Genetics & Genomes 8(6), 1477-1485.
Doi 10.1007/S11295-012-0547-Y
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(2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature 492(7429), 423-7.
10.1038/nature11798
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(2012) The Cassava Genome: Current Progress, Future Directions.
Trop Plant Biol 5(1), 88-94.
10.1007/s12042-011-9088-z
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(2012) A genome-wide survey of switchgrass genome structure and organization.
PLoS One 7(4), e33892.
10.1371/journal.pone.0033892
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(2012) Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.
New Phytol 196(3), 713-25.
10.1111/j.1469-8137.2012.04258.x
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(2012) A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy.
Bmc Genomics 13.
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2011
(2011) Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.
New Phytologist 192(1), 151-163.
DOI 10.1111/j.1469-8137.2011.03786.x
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(2011) The Switchgrass Genome: Tools and Strategies.
Plant Genome 4(3), 273-282.
DOI 10.3835/plantgenome2011.10.0026
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(2011) Meraculous: de novo genome assembly with short paired-end reads.
PLoS One 6(8), e23501.
10.1371/journal.pone.0023501
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(2011) Chemical, ultrastructural and supramolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance.
Energy & Environmental Science 4(12), 4962-4971.
Doi 10.1039/C1ee02073k
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(2011) FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar.
Proc Natl Acad Sci U S A 108(26), 10756-61.
10.1073/pnas.1104713108
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(2011) The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage.
J Biol Chem 286(24), 21427-39.
10.1074/jbc.M111.233734
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(2011) Lignin content in natural Populus variants affects sugar release.
Proc Natl Acad Sci U S A 108(15), 6300-5.
10.1073/pnas.1009252108
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(2011) Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants.
Plant Cell Physiol 52(2), 317-32.
10.1093/pcp/pcq188
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(2011) Identification of candidate genes in Arabidopsis and Populus cell wall biosynthesis using text-mining, co-expression network analysis and comparative genomics.
Plant Science 181(6), 675-687.
DOI 10.1016/j.plantsci.2011.01.020
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(2011) Comparative analysis of GT14/GT14-like gene family in Arabidopsis, Oryza, Populus, Sorghum and Vitis.
Plant Science 181(6), 688-695.
DOI 10.1016/j.plantsci.2011.01.021
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2010
(2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer.
Science 327(5963), 302-5.
10.1126/science.1182213
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(2010) The dynamic genome of Hydra.
Nature 464(7288), 592-596.
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(2010) Evolution of an expanded sex-determining locus in Volvox.
Science 328(5976), 351-4.
10.1126/science.1186222
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(2010) The genome of Naegleria gruberi illuminates early eukaryotic versatility.
Cell 140(5), 631-42.
10.1016/j.cell.2010.01.032
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(2010) High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.
Bmc Genomics 11.
Artn 38Doi 10.1186/1471-2164-11-38
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(2010) Genome sequencing and analysis of the model grass Brachypodium distachyon.
Nature 463(7282), 763-8.
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(2010) Parallel evolution of nacre building gene sets in molluscs.
Mol Biol Evol 27(3), 591-608.
10.1093/molbev/msp278
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(2010) Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.
Proceedings of the National Academy of Sciences of the United States of America 107(51), 22032-22037.
DOI 10.1073/pnas.1009526107
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(2010) Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.
Science 329(5988), 223-6.
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(2010) Genome sequence of the palaeopolyploid soybean.
Nature 463(7278), 178-83.
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(2010) Genome sequence of the palaeopolyploid soybean.
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(2009) A recommendation for naming transcription factor proteins in the grasses.
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(2009) Old can be new again: HAPPY whole genome sequencing, mapping and assembly.
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(2009) Anatomy and development of the nervous system of Nematostella vectensis, an anthozoan cnidarian.
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(2009) Brachypodium distachyon: a New Model for Biomass Crops.
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2008
(2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
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(2008) Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.
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(2008) Promoter elements associated with RNA Pol 11 stalling in the Drosophila embryo.
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(2008) The amphioxus genome illuminates vertebrate origins and cephalochordate biology.
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(2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
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(2008) The genome sequence of Bifidobacterium longum subsp infantis reveals adaptations for milk utilization within the infant microbiome.
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(2008) The Trichoplax genome and the nature of placozoans.
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2007
(2007) Novel metabolism in Chlamydomonas through the lens of genomics.
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(2007) Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana.
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2006
(2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
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2004
(2004) The sequence and analysis of duplication-rich human chromosome 16.
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