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… in the DOE Bioenergy Research Centers. The  Plant Gene Atlas initiative develops gene expression catalogs across JGI Plant Flagship … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …

… strains, whereby they can modulate host metabolism, gene expression and phenotype. We have recently identified … We will eventually construct a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… … DAN: Welcome back for episode 9 of Natural Prodcast. This … he’s been leading an effort to build The Natural Product Atlas , or NPAtlas, a freely accessible natural products … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural …

The JGI’s Metabolomics Program works to uncover the roles of small … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … scientists are able to link metabolic activity with gene expression, providing deeper insights into functional …

… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … was a proposal on synthetic biology of engineering gene expression in bacteria – however, the professor was actually … have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is a very raw …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … pathway analysis, optimization of cell- and cell free-based expression platforms, tools and data for deciphering …

… … DAN UDWARY: You’re listening to the Department of Energy … the Nature Chemical Biology — or early this year– this new tool that we call CORASON, which is basically an acronym to … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… using these together along with all of our computational tools to really build out much more of an integrative … explore the regulation of biosynthetic gene cluster expression in organisms. And that’s led by Hiroshi Otani … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… chemical biology, a lot of which people classify as tool building. So I worked with a really great guy named … of these or any organisms. So developing good heterologous expression hosts like maybe in many fields now like in … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …