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… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene …

… Plants are complex organisms that harbor a fantastic diversity … by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …

… The purpose of this policy is to establish communication norms around JGI contributions, ensure … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …

… DAN: Welcome back for episode 9 of Natural Prodcast. This … he’s been leading an effort to build The Natural Product Atlas , or NPAtlas, a freely accessible natural products … we’re now very much – we’re interested in how we can build tools which will let us see the whole landscape of natural …

… The JGI’s Metabolomics Program works to uncover the roles of small … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to …

… last decade or so. He’s involved with a lot of the common tools that genome miners use, including antiSMASH, MIBiG, … was a proposal on synthetic biology of engineering gene expression in bacteria – however, the professor was actually … have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is a very raw …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … pathway analysis, optimization of cell- and cell free-based expression platforms, tools and data for deciphering …

… using these together along with all of our computational tools to really build out much more of an integrative … explore the regulation of biosynthetic gene cluster expression in organisms. And that’s led by Hiroshi Otani … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …

… DAN UDWARY: You’re listening to the Department of Energy … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … the Nature Chemical Biology — or early this year– this new tool that we call CORASON, which is basically an acronym to …