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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at … phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great Plate-Count Anomaly” … to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary …

… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Cell 2019) and massive reconstruction of genomes from uncultivated microbes (Nature 2019). Other projects in the group include the sequencing and comparative analysis of thousands of archaeal …

… to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial … This process enables our users to explore the genetic makeup of microbial communities, shedding light on …

… both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved … is still limited. One key challenge is to complement diversity surveys ( Who is there? ) with activity … metatranscriptomics provide invaluable information on virus diversity and activity in microbial communities, however …

… facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … the globe to identify genes to improve our domesticated species.  The program supports the development of …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and … of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw … discuss available options. Note: In 2021, we conducted an extensive internal product audit to analyze the scientific …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Publications … research experience "light" and... they're getting a publication at the end. " — Professor Matt Escobar,  CSU San …

… resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, isolate … into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 … laboratories with minimal overhead (cost of media, ITS sequencing and tissue preparation), allowing participation …