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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …

… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … and identification of small and large structural variation — this variation drives major phenotypic … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … ALISON TAKEMURA: I know that it’s looking in the genome for genetic elements of interest, you know, something like … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … be her room now but, well, it became my office due to the pandemic. And she’s sleeping in our bedroom together with us …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … discuss available options. Note: In 2021, we conducted an extensive internal product audit to analyze the scientific … percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … energy and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for … cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell …

… nature of these compounds. At the end of the day, all the content produced by microbes the result of millions of years … the active site of an enzyme. So there is no promiscuity, generally speaking, in primary metabolism. Nevertheless, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

Nadine? NADINE ZIEMERT: Yes, perfect. I’ve heard it in all variations, and I think that was perfect. DAN UDWARY: I … of it. So it wasn’t only chemistry or only biochemistry or genetics. It was also ecology. It was also evolution. It was … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …