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… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …

… Plants are complex organisms that harbor a fantastic … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated …

… The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly … technologies including PacBio and Illumina.  The synthetic biology user science group: The applications group is focus …

… in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to … A complete publication list available at Google Scholar. Dutkiewicz, Z. …

… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software includes: … tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process automation …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them with the knowledge and skills …

… The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … challenges. Through innovative research in synthetic biology, the program enables the design and synthesis of … Program plays a central role in advancing functional genomics, focusing on developing genetic systems that can …

… from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great … valuable reference genomes in under-populated areas of the tree of life, as reference genomes are critical to serve as … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …

… communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . Research Team    … from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial functions in … sequence and assemble samples, such as those from soil and plants, our group researches the use and implementation of …