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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging … by the due date printed below. Proposals will be invited from those applicants whose LOI is approved. The letter of …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in, garbage out. So if we’re just using predictions to refine our predictions, we’re not really going to get … might be everywhere, but only at a certain kind of coarse scale. DAN UDWARY: Yeah I think that’s right. That’s why I …

We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies … pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of principle’ research …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … applications. The program provides high-quality, large-scale genomic data to advance microbial research that drives … cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … SNP and short indel calls, rearrangement detection, population analysis Text file of SNPs (incl location in …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … who will use your technology and then they can help you to fine tune your technology and probably improve it, but also, … biodiversity over the past 80 years! DAN: Maybe! How much variation in that collection do you think there was? BEN: So …

… back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First … our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … tell us what’s active, which peak is active before we even scale up. The reason that we did that was to fit what we …