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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … and computational biology, and to empower them with the knowledge and skills necessary to extract meaningful …
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SoyDB: a knowledge database of soybean transcription factors
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy … dark matter. And the idea behind this is that, if we acknowledge that a pathway is a result of evolutionary forces, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … are important for bioeconomy applications. By expanding our knowledge of microbial functions and interactions, the … resistance genes, and ecosystem information. … The IMG/VR database offers the largest publicly available collection of …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … Sequencing technologies have expanded viral diversity knowledge, enabling global exploration. We develop … Microbial Genomes and Plasmid Resources … Genomes Online Database … National Microbiome Data Collaborative … …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger … or NPAtlas, a freely accessible natural products structure database, which is going to be just invaluable to the …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint … that it’s like a perfect storm in terms of fundamental knowledge and enabling technology, but interesting biology … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … Purification (DAP) sequencing to express hundreds of transcription factors and determine their binding sites …
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Natural Prodcast Episode 12: Nadine Ziemert
… … DAN UDWARY: You’re listening to the Department of Energy … want to understand. And then of course, we can use that knowledge to actually use it in drug discovery, right? I … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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