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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … with a list of JGI staff who contributed to their project, using the CRediT taxonomy ( credit.niso.org/ , with …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism … the metabolic potential of uncultivated lineages is of high value to establish models and hypotheses, experimental …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … least a certain level of similarity. So if similarity was higher than a certain kind of volume. And if you do that, …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Sequencing Technologies & Products
… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics …   Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing pipelines. …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of … A primary purpose of this project is to bring educators from a broad range of …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific … scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … the Letter of Intent; rather proposals are submitted in a single step. …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence data, …
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Publications
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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