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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome Portal …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and I talked about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, … least a certain level of similarity. So if similarity was higher than a certain kind of volume. And if you do that, …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … for comparative analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & …

… system … As part of this project, pairwise average nucleotide identities (ANI) and fraction of orthologous … 18% of all existing species. Additionally, the complete linkage clustering made it possible to confidently assign … ANI is used to ascertain the species specificity of single cells and genomes extracted from metagenomes, and …

… percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than … a community. Individual samples are fractionated using a density gradient, and each fraction is sequenced Combined … ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence data, …

… scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … the Letter of Intent; rather proposals are submitted in a single step. … The researcher then submits a proposal for … more customized analysis, the JGI also participates in publication of results. … Submission … More on Sequencing …

Below is a brief description of the process needed to prepare and ship samples for … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control … metadata to JGI database for shipping approval (n/a if using web-based form) All shipments originating outside the …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … to the 2-year use-restriction policy as described here. No single project has data under both use-restriction and …

… research proposal.  Successful applications will focus on high-risk/high-payoff proposals within the focused topic … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … Accessing Resources at Multiple DOE User Facilities with a Single Proposal describes the resources available from the …