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Publication Policy
JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Plant-Microbial Interactions Group
We use a variety of genomics-powered tools to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … 2,140     Q4 2025 175     2,167     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours* Goal Actual Total Actual % of …
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Publications
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … of proper nucleic acid quantification in our Illumina and PacBio sequencing workflows and provide guidance as to how …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of Energy Joint Genome Institute, builds …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … such as those involving biosynthetic clusters, or high complexity combinatorial libraries.  We have developed and … engineering pathways to function in heterologous hosts, by combining combinatorial synthesis, high-throughput …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five … you. We have projects in genome sequencing, DNA synthesis, transcriptomics, metabolomics, and natural products in …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the latest  … Office to help ensure the JGI’s genomic capabilities are ready and applicable to users.  … Sequencing Technologies …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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