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Publication Policy
… JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … the authorship list based on the contributor list provided by JGI. …
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis … metabolomics Below is a table of standard product offerings, including a description of the product and deliverables … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …
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Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
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Publications
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome Institute, builds upon thousands of … recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in …
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … and enabling state-of-the-art sample processing and sequencing capabilities. The Genomic Technologies Group, …
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New Lineages of Life Group
… environmental samples. This work combines third generation sequencing and machine learning to enable fast, accurate … oceanic fluids to hypersaline lakes and hyperthermal springs. This research provides insights into the limits of life … A complete publication list available at Google Scholar. Dutkiewicz, Z. …
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Institutional User Agreements
… any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Environmental Genomics Group
… our understanding of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture … in various environments and their potential applications. By recovering population genomes from metagenomes, we gain insights into … (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify …
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Single Cell Research Group
… The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which highlights our skewed … Bacteria and Archaea has steadily been widening since 2005. This gap is also reflected in the strongly biased … to only three phyla. The Woyke group uses single-cell sequencing as a means to begin filling this gap. A primary …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute … protection of certain types of data to support their use by those generating data. The JGI Data Policy applies to … this policy) produced through all user projects accepted FY22 and later through the Community Science Program (CSP), …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, … environmental sustainability, and many other applications. By understanding how microbes contribute to ecosystem …
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