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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Publications
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FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …
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Plant Program
With collaborative user projects, the JGI’s Plant Program … environmental stress and microbial communities affect plant growth and productivity. These insights have the potential … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … tricky problem because secondary metabolism genes are duplications of primary metabolism genes. They have evolved …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid … in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on … of people who talk about even antibiotics as signals versus growth inhibitory compounds or warfare agents. And there’s … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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User Support
The JGI Project Management Office carries out a number of … collaborate with users to develop project requirements, define the scope of work and outline roles and responsibilities … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome … mean, you might be producing things at different stages of growth or different signals from the environment might cause … metabolism is adaptation of primary metabolism. They’re duplications of the genes, and modifications that have been …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … of their function. ALISON TAKEMURA: And what does the duplication part have to do with it? FRANCISCO BARONA-GOMEZ: … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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