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… user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … resilience. The program’s discoveries support a plant based bioeconomy where plants are a major source of chemical … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication …

DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … annotation based on chemical standards or computational approaches. Relative abundance of identified metabolites and …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … responses. The program employs advanced mass spectrometry-based methods to analyze metabolites from a wide range of … including state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … and archaea in their natural environments using single cell approaches. This includes linking strain-level genetic … the functional capability of microbial communities based on their metagenome sequence, in the context of …

… for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in … roles in the environment, can unlock new avenues for bio-based products and bioenergy crop enhancement. The program … deciphering regulatory networks, and refining experimental approaches to explore the synthesis and function of these …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* … PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download …

… pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … thing I’m really fascinated by looking at the field of cyanobacterial chemical ecology and all of that. So again, … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… of Dermatology in Human Health at Emory University based in Atlanta, Georgia. I’m also the herbarium curator, … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … of what you do then? And are there ways to do data-driven approaches at some point like that in the future? CASSANDRA …