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… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …

… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better understand the plant-associated terrestrial world. Research …

… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … evolution of polyploidy.” Evaluating Polyploid Genomes in a Pan-genomic Context For the study, partly enabled by the …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … , which is a machine learning tool that tries to look at patterns of Pfams through a genome and predict where regions …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …

… The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … and advanced genomic analysis to explore the rich diversity of fungi and algae. These organisms play a critical role in …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … the type of work or specific proposal to be covered under the Agreement. The signing official must have the … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …