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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … so, and JGI expects acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, … is expected to include all those contributing significantly to the work. The JGI has significant experience and …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … of the denitrifying thermophile Geobacillus thermodenitrificans subsp. calidus DSM 22629T. M Snook, et. al.  2024 . …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… it is, hear me make a pained analogy to the California gold rush. And we’ll talk about a new JGI paper that’s just … Because we always need new antibiotics. We need new cancer agents. We need treatments for humans. And it just so … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C …
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Products
… pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a … and cloned into a vector of choice; up to 210,000 variants can be made Pool of variant libraries; sample sequencing to … assembly. For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, …
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Metagenome Program
… sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses … Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of microbial … genomes, SAGs, MAGs, metagenomes and metatranscriptomes. … GOLD is a web resource for comprehensive access to …
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Natural Prodcast Episode 11: Marnix Medema
… there, and welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome … and I’m so happy we got the chance to talk and that now I can bring it to you. So enjoy, episode 11 of Natural … together with us still while she’s still four months old. So it’s not a bad location for a little baby. Rooming …
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Synthesis
… by designing and assembling physical DNA constructs that can then be functionally characterized.    We provide custom DNA … design for assembly by Gibson, Yeast recombination and Golden Gate methods … gRNA-SeqRET … BOOST … Synthesis …
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Natural Prodcast Episode 14: Nigel Mouncey
… so I took a little break, but I’m hoping that from here I can get back to a regular schedule. I’m going to kick things … cancel last year’s event due to COVID, but this year we’re holding the meeting virtually, and registration is totally … help the Society grow. And so I’ve been the chair of the publications committee for the last, what is it now, five …
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Natural Prodcast Episode 7: Ben Shen
… welcome back for Episode 7 of the Natural Prodcast. It’s been about a month now since we dropped our first six … I’ll put up some structures and link to some resources you can use to get caught up, if you’re not already familiar … hundreds of strains that has a potential to produce 100-fold more of all the natural products. If Dan and I were able …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP …
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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