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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

… by microbial partners. We use a variety of genomics-powered tools to study this complexity, including single-cell and … characterization methods, in addition to bioinformatics tools to elucidate phage function in this tripartite … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing of …

… innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … Genome to Enzymes and Pathways focuses on discovering and … and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose …

… to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data … NOTICE The Data Portal application has replaced the JGI Genome Portal . Book a session via the appointment calendar … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … to the development and maintenance of a number of viromics tools and resources. The main focus of these resource …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … functions. The Metabolomics Program focuses on advancing tools and technologies to analyze metabolites in …

… behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … productivity. These insights have the potential to inform strategies that improve agricultural yields and support …