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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … of collaborators and users. For example if, by agreement with the collaborator, JGI staff take a lead role in the …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … visible and available in JGI systems. Users not involved with the proposal under which the data were generated (e.g. … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

The Metagenome Program uses advanced sequencing technologies to … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … interactions, over ecological and evolutionary time scales.The Metagenome Program combines large-scale, …

The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … it is that secondary metabolism is ancient and, therefore, widespread. So if secondary metabolism was there when– and …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …

… applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an accelerated timeline as compared with the standard CSP projects. In … provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS …

… clones if low number of variants, or pool of variants with sample sequencing to predict the number of successful … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … Plant, Algal, Fungal, and Microbial DAP-seq Used for genome-wide identification of transcription factor binding sites. …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI …