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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … ( IMG ) 280/298 Microbial Improved Draft, Isolate High quality draft assembly of long-read sequence data, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … but in subtle ways that affect fitness. And so, doing a high level kind of analysis, you just might not be able to …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … the program enables the design and synthesis of complex genetic pathways and biosystems. It The program fosters … tools that enhance biofuel production and biosystem design. High-throughput design and synthesis capabilities accelerate …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Earth’s ecosystems. … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to … metagenomic sequencing, assembly and binning have enabled reconstruction of complete or near-complete population genomes …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology … as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … such as those involving biosynthetic clusters, or high complexity combinatorial libraries.  We have developed …
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Publications
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include … … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … single cell approaches. This includes linking strain-level genetic variation to ecological niche adaptations.  Single …
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Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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